PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI10G19970.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 339aa    MW: 36489.9 Da    PI: 10.4168
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI10G19970.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix72.19.7e-2355144186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      +Wt++e+laLiea+r+++e lr+g+l++ +W++v+ ++        +  ++s +qC++k+e+l+kry+++++++ +r+++   ++p+f  l+
  ORUFI10G19970.1  55 CWTHEETLALIEAYRDRWEGLRKGNLRASDWDDVAGAVtarcgrFPTATHKSGVQCRHKIEKLRKRYRAERARAAGRSKG--PKWPFFPLLH 144
                      8*************************************99998888899**************************98443..47****9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.5E-2154145No hitNo description
PROSITE profilePS500905.99356118IPR017877Myb-like domain
SMARTSM005951.1E-563147IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MPRRRAVPPL PRWAAPPTTT TTAPPRDKPR GGXPAAAAVS SGGAGGSGRR LPPPCWTHEE  60
TLALIEAYRD RWEGLRKGNL RASDWDDVAG AVTARCGRFP TATHKSGVQC RHKIEKLRKR  120
YRAERARAAG RSKGPKWPFF PLLHDLAGGG APDPSPNPII KIKSKGPAAA AASPSPASPS  180
PVSSPSSEED EEEEAAADAG RSRSLHGLIS NGGSGSGLRF TIPKASRSKP VAQREQPTAI  240
KVEKSEEDAE AEAMAEVASA LRAVGDKFLR MEERRLEISL QIEKERMESE MKRTQTLLDA  300
QQLFVEAFLG KQQQHHHHHK KAKVISAAAA AATAAMDED
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0847630.0AC084763.4 Oryza sativa chromosome 10 BAC OSJNBa0027P10 genomic sequence, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006662073.11e-150PREDICTED: trihelix transcription factor ASIL2-like, partial
TrEMBLA0A0E0R2K30.0A0A0E0R2K3_ORYRU; Uncharacterized protein
STRINGORUFI10G19970.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56893250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.12e-17Trihelix family protein