PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI10G18500.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 362aa MW: 38695.3 Da PI: 4.7909

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI10G18500.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.4	7.1e-10	202	244	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++P + K++ +iL ++ Y+k+L ORUFI10G18500.1 202 MAERRRRKRLNDRLSMLRSVVPRiS------KMDRTSILGDTIGYVKEL 244 79*******************66......*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.665	195	244	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.32E-14	199	254	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.8E-11	201	250	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-7	202	244	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.6E-14	202	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MELMDDDGSS SLLEELMAPL RRGTPTTTPE DLWLEAYPMM MSPMCGDGVM LGDLLVGGGN 60 ARNTLASPPP PPPPSFPLPV PLTTTTPCPP LHEVSFEFDS IDCLGEVCNP YKRSGGAVRA 120 TAAAQVMVAA MDPRREAASS AVAVAAVEEE ERCKARRGAG GGGDSGELAP MFVFGGGGGA 180 AASVRPRSCR PPQPGAPSKN LMAERRRRKR LNDRLSMLRS VVPRISKMDR TSILGDTIGY 240 VKELMDRIKN LQVEAATGDS SSSSTENLSM LKLNTLKPPP RENGSTRIEM ACAAIPELLP 300 STLAALEALG VEIEQCVISC FDDFAMQASC LQDDKKREMT RDTEEIKQTL FRSAGYGDGC 360 LI

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MELMDDDGSS SLLEELMAPL RRGTPTTTPE DLWLEAYPMM MSPMCGDGVM LGDLLVGGGN  60
ARNTLASPPP PPPPSFPLPV PLTTTTPCPP LHEVSFEFDS IDCLGEVCNP YKRSGGAVRA  120
TAAAQVMVAA MDPRREAASS AVAVAAVEEE ERCKARRGAG GGGDSGELAP MFVFGGGGGA  180
AASVRPRSCR PPQPGAPSKN LMAERRRRKR LNDRLSMLRS VVPRISKMDR TSILGDTIGY  240
VKELMDRIKN LQVEAATGDS SSSSTENLSM LKLNTLKPPP RENGSTRIEM ACAAIPELLP  300
STLAALEALG VEIEQCVISC FDDFAMQASC LQDDKKREMT RDTEEIKQTL FRSAGYGDGC  360
LI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	203	210	ERRRRKRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK063669	0.0	AK063669.1 Oryza sativa Japonica Group cDNA clone:001-119-D04, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015613752.2	0.0	transcription factor TDR-like
Swissprot	Q9LSL1	1e-48	BH093_ARATH; Transcription factor bHLH93
TrEMBL	A0A0E0R205	0.0	A0A0E0R205_ORYRU; Uncharacterized protein
STRING	ORUFI10G18500.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18317	9	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	4e-48	beta HLH protein 93

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]