PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI10G17910.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 586aa    MW: 62889.1 Da    PI: 6.9728
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI10G17910.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.98.2e-093443811954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yps  ++  LA+++gL+ +qV +WF N R +
  ORUFI10G17910.1 344 FEHflHPYPSDVDKHILARQTGLSRSQVANWFINARVR 381
                      664459******************************88 PP
2BELL94.31.1e-30207277272
             BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                       +elq+ k kL ++leeVd+rY++y+eq++++++sFeavag  +a++Yt+lA+++iSrhFr+L+d ++ q+
  ORUFI10G17910.1 207 AAELQRLKGKLYTMLEEVDRRYRRYCEQMRALAASFEAVAGERAAASYTRLASRTISRHFRSLRDGVVAQL 277
                      5799****************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.9E-45140275IPR006563POX domain
PfamPF075261.5E-42146273IPR006563POX domain
PROSITE profilePS5007112.001322385IPR001356Homeobox domain
SMARTSM003895.2E-9325389IPR001356Homeobox domain
CDDcd000865.15E-12325386No hitNo description
SuperFamilySSF466893.85E-17326392IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-27328391IPR009057Homeodomain-like
PfamPF059202.2E-17342381IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MAHDPSLGYA DYFAAEVDGT GATELYGLQQ HQQGVGVAEM FGVRGLMPAA HAHEQSKGVG  60
ALVVGGGGVD DGGATTLPTV HFGGLGELHH HQHRQSQAPL SLSLHRPEAA ATSLLMQQQQ  120
QHLHHQPSPP AGAASTWQLQ QGAWHLRGSR FLLPTQQLLQ EFCSLPVKST TSPSSASKAT  180
KPPQEEAASG GGSSSWTAPT QIQSMDAAEL QRLKGKLYTM LEEVDRRYRR YCEQMRALAA  240
SFEAVAGERA AASYTRLASR TISRHFRSLR DGVVAQLQAV RKQLGEKDTA VPGMTKGETP  300
RLRVLDQCLR QHKAYQAGML ESHPWRPQRG LPERAVSILR AWLFEHFLHP YPSDVDKHIL  360
ARQTGLSRSQ VANWFINARV RLWKPMVEEM YAEEMKDEEG SGQSTQASNP QNPNPSSYTS  420
EVRGGGGGGE DRGEQKPSRA QLLHDAGSLA SVVSIGHGGA GRTMVDHHHH QSLNFGMMDQ  480
LDFDAYEAAG GGQGFGAGGG VSLTLGLQQQ HADPHDGVNV AFAAAAAPPN SSGVAAEYLF  540
MGGGEHQQQL PQTAQFGAVM EGDAASHYRG LSATAAGFHL LHDLAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A2e-16331388158Homeobox protein Meis1
4xrs_B2e-16331388158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0680290.0AK068029.1 Oryza sativa Japonica Group cDNA clone:J013134A07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614125.10.0BEL1-like homeodomain protein 4
TrEMBLA0A0E0R1T50.0A0A0E0R1T5_ORYRU; Uncharacterized protein
STRINGORUFI10G17910.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38143764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.29e-83BEL1-like homeodomain 2