PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ORUFI10G16810.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 885aa MW: 92820.1 Da PI: 6.046 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 99.1 | 3.7e-31 | 197 | 281 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r++m+ ++r++ lk+plWeevs+k++e+g++rs+k+Ckek+en++k+yk++ke++ +r ++ +t+++f+qlea ORUFI10G16810.1 197 RWPRQETLALLKIRSDMDAAFRDATLKGPLWEEVSRKLAEEGYRRSAKKCKEKFENVHKYYKRTKESRAGR--NDGKTYRFFTQLEA 281 8********************************************************************97..56668*******85 PP | |||||||
2 | trihelix | 111 | 7.1e-35 | 574 | 659 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r+++++r++++ k+plWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a ORUFI10G16810.1 574 RWPKAEVHALIQLRSNLDNRYQEAGPKGPLWEEISAGMRRLGYSRSSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 659 8*********************************************************************8.99***********85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0034 | 194 | 256 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 3.1E-21 | 196 | 282 | No hit | No description |
CDD | cd12203 | 5.96E-28 | 196 | 261 | No hit | No description |
PROSITE profile | PS50090 | 6.737 | 196 | 254 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0087 | 571 | 633 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 9.8E-24 | 573 | 660 | No hit | No description |
PROSITE profile | PS50090 | 7.317 | 573 | 631 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-4 | 573 | 630 | IPR009057 | Homeodomain-like |
CDD | cd12203 | 1.66E-28 | 574 | 638 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 885 aa Download sequence Send to blast |
MAIYYLEREG LTHNMPMHGH FYTPLPLNHW HADTTNAADM TRGPMRMWAP HVSGMNFIFF 60 ISKEKVLMRV EMVSSPDVLI IPSPPFPSGN TRGGGGGGGG SSMQQQQPGG GGGGVQQFGA 120 VAPEMSPFSP AGGGGGGRIS MAEAASPISS RPPPAQQQFD ELGVGGGGGG GGGFDAEALA 180 AAAVGEEGAS GGAGGNRWPR QETLALLKIR SDMDAAFRDA TLKGPLWEEV SRKLAEEGYR 240 RSAKKCKEKF ENVHKYYKRT KESRAGRNDG KTYRFFTQLE ALHGTAAGVV AAPSPVTSLA 300 PPPATAVGVS GGVRAPAEPP PAVVMGNMMS FSTSNTEEYS DEEDSDDEGT EDMGGGGGDE 360 RGKRKRLSEG GAAAGGGGGG GGGGGSGKMM RFFEGLMKQV MERQEAMQQR FLEAIEKREQ 420 DRMIREEAWR RQEMARLARE QEILAQERAM AASRDAAVVS FIQKITGQTI PMPPIIAAPA 480 ITVMPPPAPS QPPQPPPPPS HPTPITSVAP TPPPPPPAAA AAAASQPSPQ ATKSPLPATP 540 QTQSSMDIVM TAAEAHDAGY DGSGGGGGQP SSSRWPKAEV HALIQLRSNL DNRYQEAGPK 600 GPLWEEISAG MRRLGYSRSS KRCKEKWENI NKYFKKVKES NKKRPEDSKT CPYFHQLDAL 660 YRNKAALNSS SSAAAAAAPA LPPPEHAEPA VTVAAPITQT PPPPPQPVTT TKNGNGTSST 720 NGANGEGGGG GSGGMQMQAS NGSVVAGNKF FTGAAAKKPE DIMKEMMEQR PQQPAAANNA 780 FNRTDGGGGG GGVDSDNMDE DDEDDYDDDD DDDDDDVDGN KMQYEIQFQH QHHHQQPPQH 840 RHQQSVVRPN AAASAAAGGN PPGTAAPATA AAATTTTGSF LAMVQ |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 87 | 100 | SGNTRGGGGGGGGS |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC025296 | 0.0 | AC025296.10 Oryza sativa chromosome 10 BAC OSJNBa0076F20 genomic sequence, complete sequence. | |||
GenBank | AP014966 | 0.0 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025794483.1 | 0.0 | trihelix transcription factor GTL1-like isoform X1 | ||||
Refseq | XP_025794484.1 | 0.0 | trihelix transcription factor GTL1-like isoform X1 | ||||
Swissprot | Q39117 | 5e-53 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
TrEMBL | A0A0E0R1E3 | 0.0 | A0A0E0R1E3_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI10G16810.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP606 | 38 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G76880.1 | 5e-49 | Trihelix family protein |