PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI10G16810.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 885aa    MW: 92820.1 Da    PI: 6.046
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI10G16810.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix99.13.7e-31197281187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW++qe+laL+++r++m+ ++r++ lk+plWeevs+k++e+g++rs+k+Ckek+en++k+yk++ke++ +r  ++ +t+++f+qlea
  ORUFI10G16810.1 197 RWPRQETLALLKIRSDMDAAFRDATLKGPLWEEVSRKLAEEGYRRSAKKCKEKFENVHKYYKRTKESRAGR--NDGKTYRFFTQLEA 281
                      8********************************************************************97..56668*******85 PP

2trihelix1117.1e-35574659187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW+k ev+aLi++r+++++r++++  k+plWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  ORUFI10G16810.1 574 RWPKAEVHALIQLRSNLDNRYQEAGPKGPLWEEISAGMRRLGYSRSSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 659
                      8*********************************************************************8.99***********85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0034194256IPR001005SANT/Myb domain
PfamPF138373.1E-21196282No hitNo description
CDDcd122035.96E-28196261No hitNo description
PROSITE profilePS500906.737196254IPR017877Myb-like domain
SMARTSM007170.0087571633IPR001005SANT/Myb domain
PfamPF138379.8E-24573660No hitNo description
PROSITE profilePS500907.317573631IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.9E-4573630IPR009057Homeodomain-like
CDDcd122031.66E-28574638No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 885 aa     Download sequence    Send to blast
MAIYYLEREG LTHNMPMHGH FYTPLPLNHW HADTTNAADM TRGPMRMWAP HVSGMNFIFF  60
ISKEKVLMRV EMVSSPDVLI IPSPPFPSGN TRGGGGGGGG SSMQQQQPGG GGGGVQQFGA  120
VAPEMSPFSP AGGGGGGRIS MAEAASPISS RPPPAQQQFD ELGVGGGGGG GGGFDAEALA  180
AAAVGEEGAS GGAGGNRWPR QETLALLKIR SDMDAAFRDA TLKGPLWEEV SRKLAEEGYR  240
RSAKKCKEKF ENVHKYYKRT KESRAGRNDG KTYRFFTQLE ALHGTAAGVV AAPSPVTSLA  300
PPPATAVGVS GGVRAPAEPP PAVVMGNMMS FSTSNTEEYS DEEDSDDEGT EDMGGGGGDE  360
RGKRKRLSEG GAAAGGGGGG GGGGGSGKMM RFFEGLMKQV MERQEAMQQR FLEAIEKREQ  420
DRMIREEAWR RQEMARLARE QEILAQERAM AASRDAAVVS FIQKITGQTI PMPPIIAAPA  480
ITVMPPPAPS QPPQPPPPPS HPTPITSVAP TPPPPPPAAA AAAASQPSPQ ATKSPLPATP  540
QTQSSMDIVM TAAEAHDAGY DGSGGGGGQP SSSRWPKAEV HALIQLRSNL DNRYQEAGPK  600
GPLWEEISAG MRRLGYSRSS KRCKEKWENI NKYFKKVKES NKKRPEDSKT CPYFHQLDAL  660
YRNKAALNSS SSAAAAAAPA LPPPEHAEPA VTVAAPITQT PPPPPQPVTT TKNGNGTSST  720
NGANGEGGGG GSGGMQMQAS NGSVVAGNKF FTGAAAKKPE DIMKEMMEQR PQQPAAANNA  780
FNRTDGGGGG GGVDSDNMDE DDEDDYDDDD DDDDDDVDGN KMQYEIQFQH QHHHQQPPQH  840
RHQQSVVRPN AAASAAAGGN PPGTAAPATA AAATTTTGSF LAMVQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
187100SGNTRGGGGGGGGS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0252960.0AC025296.10 Oryza sativa chromosome 10 BAC OSJNBa0076F20 genomic sequence, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794483.10.0trihelix transcription factor GTL1-like isoform X1
RefseqXP_025794484.10.0trihelix transcription factor GTL1-like isoform X1
SwissprotQ391175e-53TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A0E0R1E30.0A0A0E0R1E3_ORYRU; Uncharacterized protein
STRINGORUFI10G16810.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.15e-49Trihelix family protein