PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI10G14150.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 698aa    MW: 75579.9 Da    PI: 6.9419
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI10G14150.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.52.6e-23128229199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g +W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   ++
  ORUFI10G14150.1 128 FAKTLTQSDANNGGGFSVPRYCAETIfpkldyrADPPVQ--TVLAKDVHGVVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RT 217
                      89****************************996555555..8999*********************************************..44 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      + +el+v+++r+
  ORUFI10G14150.1 218 RHGELCVGIRRA 229
                      79999*****97 PP
2Auxin_resp116.71.9e-38288371183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                      aa+ as++++Fev Y+Prast++Fvvk+++v++a++++++ GmRfkmafetedss++++ +Gt+++v+ +dp rWpnS+Wr+L+
  ORUFI10G14150.1 288 AASLASSGQPFEVAYYPRASTPDFVVKAASVQAAMRIQWCSGMRFKMAFETEDSSRISWfMGTISSVQVADPNRWPNSPWRLLQ 371
                      68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-29119232IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-36121232IPR015300DNA-binding pseudobarrel domain
CDDcd100175.46E-21127228No hitNo description
PfamPF023621.7E-21128229IPR003340B3 DNA binding domain
PROSITE profilePS5086312.647128230IPR003340B3 DNA binding domain
SMARTSM010191.7E-21128230IPR003340B3 DNA binding domain
PfamPF065073.1E-33288371IPR010525Auxin response factor
PROSITE profilePS5174517.079603683IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MKEVGEVEEV RCLDPQLWHA CAGGMVQMPA PRSRVYYFAQ GHAEHADGGG GAAAAAAELG  60
PRALPPLVLC RVEGVQFLAD RDSDEVYAKI RLAPVAPGEA EFREPDELCP LGAAGDAAEP  120
SPEKPTSFAK TLTQSDANNG GGFSVPRYCA ETIFPKLDYR ADPPVQTVLA KDVHGVVWKF  180
RHIYRGTPRR HLLTTGWSTF VNQKKLVAGD SIVFLRTRHG ELCVGIRRAK RMACGGMECM  240
SGWNAPGYGG GGFSAFLKEE ESKLMKGHGG GGYMKGKGKV RMADVVEAAS LASSGQPFEV  300
AYYPRASTPD FVVKAASVQA AMRIQWCSGM RFKMAFETED SSRISWFMGT ISSVQVADPN  360
RWPNSPWRLL QVTWDEPDLL QNVKCVSPWL VELVSSIPPI HLGPFSSPRK KLRVPPHPDF  420
PFEGHLLNPI FHGNPLGPSN SPLCCYPDTA PAGIQGARHA QFGLPLTDHQ LNKLHLGLLH  480
SGSFNRLDAI TPPSRISKGF VVSSAPAHDN ISCLLSIGTP QVAEKSDDRK TTPHIMLFGK  540
AIFTEQQITS SGSTETLSPG VTGNSSPNGN AHKTGNASDG SGSSICIGFS SQGHEASDLG  600
LEAGHCKVFM ESEDVGRTID LSVFGSYEEL YGRLADMFGI EKEEIINHLH FRDAAGVVKH  660
PGEVPFSDFM KAARRLTIIA GDRERIERPL IECLVEQA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A7e-781339651392Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3186170.0AK318617.1 Oryza sativa Japonica Group cDNA, clone: J100090H20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614842.10.0auxin response factor 22
SwissprotQ9AV470.0ARFV_ORYSJ; Auxin response factor 22
TrEMBLA0A0E0R0F80.0A0A0E0R0F8_ORYRU; Auxin response factor
STRINGORUFI10G14150.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]