PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI10G10700.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 475aa MW: 50671.8 Da PI: 7.8162

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI10G10700.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.6	2.3e-05	105	127	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H ORUFI10G10700.1 105 FVCEVCNKGFQRDQNLQLHRRGH 127 89*******************88 PP
2	zf-C2H2	13	0.00031	190	212	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk++ +s+ k H +++ ORUFI10G10700.1 190 WRCERCGKRYAVHSDWKAHVKNC 212 58******************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.0E-5	104	127	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.3E-7	104	127	No hit	No description
SMART	SM00355	0.021	105	127	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.97	105	127	IPR007087	Zinc finger, C2H2
Pfam	PF12874	0.0017	105	127	No hit	No description
PROSITE pattern	PS00028	0	107	127	IPR007087	Zinc finger, C2H2
SMART	SM00355	89	155	185	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	5.0E-4	178	210	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.3E-7	185	210	No hit	No description
SMART	SM00355	99	190	210	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MLLSDLSSDQ EATGSNSHGG GGGDRMVVGS HGAAHVVLSN LFLPPAAAAA ATMLLPAAPV 60 MVRPAAMAAA QEPRAKKKRS LPGNPDPEAE VIALSPRALV ATNRFVCEVC NKGFQRDQNL 120 QLHRRGHNLP WKLRHRAAAV SAVTTAAPAP RKRVYVCPEP TCVHHDPARA LGDLTGIKKH 180 FSRKHGEKRW RCERCGKRYA VHSDWKAHVK NCGTREYRCD CGILFSRKDS LLTHRAFCDA 240 LAEESARLLA AANNSSSITT TTCNNSNISS NNNNNNINSI SNSNNLLITS SSSSPPLFLP 300 FSTTPAENPN PNQLLFLQQH QAAHHQLLLP QFQQPPSSPP AYFDHLAFGG GGGVITGSSC 360 NDDNSSIAGD VMVAAGGDSV SFGLTSEGSV TMHAGDVGRR RLTRDFLGVD HDAGEVDELE 420 LDELPADLST TAAACQGCNF AAATTAACCA TDFTTGSRQY LGRLPPVNET WSHNF

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MLLSDLSSDQ EATGSNSHGG GGGDRMVVGS HGAAHVVLSN LFLPPAAAAA ATMLLPAAPV  60
MVRPAAMAAA QEPRAKKKRS LPGNPDPEAE VIALSPRALV ATNRFVCEVC NKGFQRDQNL  120
QLHRRGHNLP WKLRHRAAAV SAVTTAAPAP RKRVYVCPEP TCVHHDPARA LGDLTGIKKH  180
FSRKHGEKRW RCERCGKRYA VHSDWKAHVK NCGTREYRCD CGILFSRKDS LLTHRAFCDA  240
LAEESARLLA AANNSSSITT TTCNNSNISS NNNNNNINSI SNSNNLLITS SSSSPPLFLP  300
FSTTPAENPN PNQLLFLQQH QAAHHQLLLP QFQQPPSSPP AYFDHLAFGG GGGVITGSSC  360
NDDNSSIAGD VMVAAGGDSV SFGLTSEGSV TMHAGDVGRR RLTRDFLGVD HDAGEVDELE  420
LDELPADLST TAAACQGCNF AAATTAACCA TDFTTGSRQY LGRLPPVNET WSHNF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-32	186	255	3	72	Zinc finger protein JACKDAW
5b3h_F	2e-32	186	255	3	72	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that acts as a flowering master switch in both long and short days, independently of the circadian clock (PubMed:18790997, PubMed:18725639, PubMed:18774969, PubMed:19304997, PubMed:24280027). Promotes flowering upstream of HD1 by up-regulating FTL1, FTL4, FTL5, FTL6, EHD1, HD3A and RFT1 (PubMed:18790997, PubMed:18725639, PubMed:18774969). Seems to repress FTL11 expression (PubMed:18725639). May recognize the consensus motif 5'-TTTGTCGTAAT-3' in target gene promoters (PubMed:18725639). {ECO:0000269\|PubMed:18725639, ECO:0000269\|PubMed:18774969, ECO:0000269\|PubMed:18790997, ECO:0000269\|PubMed:24280027, ECO:0000303\|PubMed:19304997}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00673	SELEX	Transfer from GRMZM2G011357	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by FKF1 (PubMed:25850808). Down-regulated by DLF1 (PubMed:25036785). During the basic vegetative growth phase (BVP, photoperiod-insensitive phase), suppressed via phytochrome-mediated light signals involving the phytochromobilin synthase HY2 (PubMed:25573482). {ECO:0000269\|PubMed:25036785, ECO:0000269\|PubMed:25573482, ECO:0000269\|PubMed:25850808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB359196	0.0	AB359196.1 Oryza sativa Japonica Group Ehd2 mRNA for early heading date 2, complete cds, cultivar: Tohoku IL9.
GenBank	FJ009578	0.0	FJ009578.1 Oryza sativa Japonica Group cultivar Zhonghua 11 Cys2/His2-type zinc finger transcription factor (RID1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015614407.1	0.0	protein indeterminate-domain 12
Swissprot	B1B534	0.0	EHD2_ORYSJ; Protein EARLY HEADING DATE 2
TrEMBL	A0A0E0QZ67	0.0	A0A0E0QZ67_ORYRU; Uncharacterized protein
STRING	ORUFI10G10700.1	0.0	(Oryza rufipogon)
STRING	OS10T0419200-00	0.0	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13096	28	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	3e-90	C2H2 family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Park SJ, et al. Rice Indeterminate 1 (OsId1) is necessary for the expression of Ehd1 (Early heading date 1) regardless of photoperiod. Plant J., 2008. 56(6): p. 1018-29 [PMID:18774969] Song Y,Gao Z,Luan W Interaction between temperature and photoperiod in regulation of flowering time in rice. Sci China Life Sci, 2012. 55(3): p. 241-9 [PMID:22527521] Hu S, et al. A point mutation in the zinc finger motif of RID1/EHD2/OsID1 protein leads to outstanding yield-related traits in japonica rice variety Wuyunjing 7. Rice (N Y), 2013. 6(1): p. 24 [PMID:24280027] Cai Y, et al. Dlf1, a WRKY transcription factor, is involved in the control of flowering time and plant height in rice. PLoS ONE, 2014. 9(7): p. e102529 [PMID:25036785] Yoshitake Y, et al. The effects of phytochrome-mediated light signals on the developmental acquisition of photoperiod sensitivity in rice. Sci Rep, 2015. 5: p. 7709 [PMID:25573482] Han SH,Yoo SC,Lee BD,An G,Paek NC Rice FLAVIN-BINDING, KELCH REPEAT, F-BOX 1 (OsFKF1) promotes flowering independent of photoperiod. Plant Cell Environ., 2015. 38(12): p. 2527-40 [PMID:25850808] Jin J, et al. MORF-RELATED GENE702, a Reader Protein of Trimethylated Histone H3 Lysine 4 and Histone H3 Lysine 36, Is Involved in Brassinosteroid-Regulated Growth and Flowering Time Control in Rice. Plant Physiol., 2015. 168(4): p. 1275-85 [PMID:25855537] Brambilla V,Gomez-Ariza J,Cerise M,Fornara F The Importance of Being on Time: Regulatory Networks Controlling Photoperiodic Flowering in Cereals. Front Plant Sci, 2017. 8: p. 665 [PMID:28491078]