PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI10G09870.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Dof | ||||||||
Protein Properties | Length: 442aa MW: 46663.9 Da PI: 8.038 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.6 | 6.7e-39 | 89 | 148 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC s++tkfCy+nny+++qPr+fCk C+ryWt+GGa+rnvPvG+grrknk++ ORUFI10G09870.1 89 PDKILPCPRCSSMDTKFCYFNNYNVNQPRHFCKHCQRYWTAGGAMRNVPVGAGRRKNKNA 148 7899*****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 8.0E-38 | 76 | 146 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.3E-31 | 91 | 147 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.574 | 93 | 147 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 95 | 131 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 442 aa Download sequence Send to blast |
MGECRGGGGD GLIKLFGKTI PVQPDAKDVQ QHSGSSSSST ESDVQETAAV AVADPSPRSE 60 VVDGESPPQP GGEAASHQQQ QKEMKLKKPD KILPCPRCSS MDTKFCYFNN YNVNQPRHFC 120 KHCQRYWTAG GAMRNVPVGA GRRKNKNATA AAAAHFLHRV RACAAAMPTA PHDATNATVL 180 SFGGGGGGHD APPVTLDLAE QMTRLSKEGL VAHARNADAA AGACSEVSSN RDDEQIGNTV 240 AKPANGLQQQ HPPPPHHPHH SAMNGGGIWP YYTSGIAIPI YPAAPAYWGC MIPPPGAWSL 300 PWPATVQSQA ISSSSPPTTT SAAPSVSSFT LGKHPREGGG DHEARDHHGN GHGKVWVPKT 360 IRIDNADEVA RSSIRSLFAF RGGDKADDNN DDDGTSVHKL ATTVFEPKRD GKTAKHPAIT 420 SLPLLHTNPV ALTRSATFQE GS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC021893 | 0.0 | AC021893.18 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0060A14, from chromosome 10, complete sequence. | |||
GenBank | AP014966 | 0.0 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012618 | 0.0 | CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015615013.1 | 0.0 | cyclic dof factor 1 | ||||
TrEMBL | A0A0E0QYW6 | 0.0 | A0A0E0QYW6_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI10G09870.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2099 | 37 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39660.2 | 2e-46 | cycling DOF factor 2 |