PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI10G09100.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 653aa    MW: 75643.3 Da    PI: 9.0538
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI10G09100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.42.5e-08634651926
                      GGGTS--TTTTT-SS-SS CS
          zf-CCCH   9 fartGtCkyGdrCkFaHg 26 
                      +++ G+C+yG++CkF H+
  ORUFI10G09100.1 634 YQQQGWCPYGENCKFVHD 651
                      8999*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.720.304.4E-7119163IPR003034SAP domain
SuperFamilySSF689063.3E-6120162No hitNo description
PfamPF020372.2E-7127161IPR003034SAP domain
PROSITE profilePS508008.588127161IPR003034SAP domain
Gene3DG3DSA:4.10.1000.109.7E-7623651IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.267625653IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.18E-6627652IPR000571Zinc finger, CCCH-type
SMARTSM003560.0038627652IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-6634651IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 653 aa     Download sequence    Send to blast
MAAAAAAADD DDHRTALPRE EDDGEEEEEV ESDDEEEEEG EGDGWSEEED DPEGASLADI  60
CDPDAGSDDD PAADRDLEVD AVLRSRMARM SLSSARKDRK GSRMPKMGKD EMDLLAMVDK  120
LMHDGQLEKL KVYECKAYLR MHKLRLSGNK EVLLTRIREH IEKKGAPRGV KGHLCGQRTN  180
AGRIIKESYG TKKQQHTFTG YKPWPPLHPL LIKGRNLYKD KTMRQPWLDE EERNRALQEK  240
HARGYVARKT REVRIKEKEN ERMRRLNRNK ENKSKGQDSM NKKSSQEVLP QHTVTMNTVQ  300
KRAEKIIPSL QHGESGNSSQ QHLSSKQTPT EQLLHYLPQF PHPQQHNEVL LQKGTSRTST  360
AQLTNHQAPS LQHAVKAETT QQQQQLPKSI KPAPIQQSSA YPQQYPKNQH HNQELPRVPP  420
SQEQRAAVSQ TSAARQDFTN HKAPPSRQHG GSENMRRQEI SSRPTLTPTP QQAVSYTQQQ  480
PPNHQYRNEA FRQQGGTSTS GTGFMDRQSN NWGSTDHDKP AFQPRMTFTQ KAKTYQHGSN  540
GSGHHQARVD RETHQPLRSR NQDYYWEDQS YHHQQNHHQN YYYGHRQMSQ DQYHHQQNHH  600
QNYNGRQGMN RNQYHDRQNQ NPQRFRPWKP CFIYQQQGWC PYGENCKFVH DLR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0799360.0AC079936.7 Oryza sativa Japonica Group chromosome X clone OSJNBb0061I18, complete sequence.
GenBankAC0917340.0AC091734.3 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0068A07, from Chromosome 10, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876398.10.0zinc finger CCCH domain-containing protein 62
SwissprotQ338N20.0C3H62_ORYSJ; Zinc finger CCCH domain-containing protein 62
TrEMBLA0A0E0QYL60.0A0A0E0QYL6_ORYRU; Uncharacterized protein
STRINGORUFI10G09100.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131072022
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]