PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI10G08570.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 328aa    MW: 34687 Da    PI: 7.1384
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI10G08570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.75.7e-15109160155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++Y+++L+
  ORUFI10G08570.1 109 QRMTHIAVERNRRRQMNEYLAVLRSLMPPS---YAQRGDQASIVGGAINYVRELE 160
                      79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.3E-14107164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.87E-15107164No hitNo description
PROSITE profilePS5088816.412108159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-17108170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-12109160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-11114165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MALEAVVYSH GGHFGGYGGG LMGGAPAAPW DVFAAAGGGG SWDDPGLFAA EASLDVIQGV  60
DEWEVDQDQH ASSSSKVAAR PPVKAAAAAG KRKRRRAKAA KNREEIESQR MTHIAVERNR  120
RRQMNEYLAV LRSLMPPSYA QRGDQASIVG GAINYVRELE QLLQTLEARR TIKDHIDGGA  180
GESPSPFAGF FAFPQYSTAT SGHGGGGDAH SRIVVKPAET TTTAAGGGAG TAIADIEASM  240
VEGHASVKVQ ARRRPRQLLK LVAGLHQLGL TTLHLNVTTV AAMAMYSFSL KVEDGCKLGS  300
VEEIATAVHE ILERMQEEQA FADAKTSL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19095KRKRRR
29195RKRRR
3109120RMTHIAVERNRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0588090.0AK058809.1 Oryza sativa Japonica Group cDNA clone:001-003-C09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613301.10.0transcription factor bHLH96
SwissprotQ9C7T43e-77BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0E0QYF10.0A0A0E0QYF1_ORYRU; Uncharacterized protein
STRINGORUFI10G08570.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-62bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]