PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI10G08100.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRAS | ||||||||
Protein Properties | Length: 359aa MW: 40198.9 Da PI: 5.9773 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 208.3 | 4.2e-64 | 187 | 358 | 201 | 373 |
GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294 +++Vn+++qlh+++desvs+e++rd++L++vkslsP++v++veqe+++n+ +F+ r le+l+yy+a+f+s+++ lpr+++ r++ E+++++r+i ORUFI10G08100.2 187 VIVVNFAYQLHHTPDESVSTENHRDRILRMVKSLSPRLVTLVEQESNTNTRPFFPRYLETLDYYTAMFESIDVALPRDDKRRMSAEQHCVARDI 280 789******************************************************************************************* PP GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 vn++acegaer+erhe ++kW++rl++aGF+p+pls+ +++++k+ll++++s yr+ee++g l+lgWk+r Lv+ SaW ORUFI10G08100.2 281 VNLIACEGAERVERHEVFGKWKARLTMAGFRPYPLSSVVNSTIKTLLHTYNSF-YRLEERDGVLYLGWKNRVLVVSSAW 358 ***************************************************65.************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 26.885 | 1 | 340 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.4E-61 | 187 | 358 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0004871 | Molecular Function | signal transducer activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MRDDSQMPYY NNSVPSGGNG RFYITQNHQD AHYASSDDGS QKIGSSPQAF EAPYCTLESS 60 SANGAHPAHS SASSHSISPI SGSPLSHHDS HSDHTYNSPP SASCVTEITD LQIKLRELEN 120 AILGPELDIA YDSPESALQP NIMATPENWR QLLGINTGDL KQVIIACGKA VAENDVRLTE 180 LLISELVIVV NFAYQLHHTP DESVSTENHR DRILRMVKSL SPRLVTLVEQ ESNTNTRPFF 240 PRYLETLDYY TAMFESIDVA LPRDDKRRMS AEQHCVARDI VNLIACEGAE RVERHEVFGK 300 WKARLTMAGF RPYPLSSVVN STIKTLLHTY NSFYRLEERD GVLYLGWKNR VLVVSSAWC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-25 | 188 | 358 | 203 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC113335 | 0.0 | AC113335.1 Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OJ1003C07, from chromosome 10, complete sequence. | |||
GenBank | AP014966 | 0.0 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015614551.1 | 1e-122 | scarecrow-like protein 21 | ||||
Refseq | XP_015614552.1 | 1e-122 | scarecrow-like protein 21 | ||||
Swissprot | Q9S7H5 | 1e-89 | SCL21_ARATH; Scarecrow-like protein 21 | ||||
TrEMBL | A0A0E0B9L1 | 0.0 | A0A0E0B9L1_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0QY91 | 0.0 | A0A0E0QY91_ORYRU; Uncharacterized protein | ||||
STRING | OGLUM10G07400.4 | 1e-122 | (Oryza glumipatula) | ||||
STRING | ORUFI10G08100.4 | 1e-122 | (Oryza rufipogon) | ||||
STRING | ONIVA10G07150.3 | 1e-122 | (Oryza nivara) | ||||
STRING | ORGLA10G0063900.1 | 1e-122 | (Oryza glaberrima) | ||||
STRING | OBART10G07700.2 | 1e-122 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G04890.1 | 8e-92 | SCARECROW-like 21 |
Publications ? help Back to Top | |||
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