PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI10G04960.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YC
Protein Properties Length: 335aa    MW: 36908.6 Da    PI: 5.1066
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI10G04960.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC74.91.1e-2331129297
            NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                      +++fw      ie+++  ++  lP++r+k+i+ a e   m+sa++P++++k celf+ el lr+w+ a++ +r+ +  +dia+a+t t+ + fl
  ORUFI10G04960.1  31 MEKFWRMSqeqIEESAGNEELILPISRVKNIIHAKEGGMMLSADTPAFVTKLCELFVQELILRAWVCANSHNREIILGTDIAEAITTTESYHFL 124
                      78899876122555555566779*********************************************************************** PP

            NF-YC  93 vdivp 97 
                       ++v 
  ORUFI10G04960.1 125 ANVVH 129
                      99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008085.0E-953115IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471133.67E-1653129IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.5E-1953128IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MPIPEKDGVE DNQEDDTFSR LQLLAQQRHA MEKFWRMSQE QIEESAGNEE LILPISRVKN  60
IIHAKEGGMM LSADTPAFVT KLCELFVQEL ILRAWVCANS HNREIILGTD IAEAITTTES  120
YHFLANVVHG HQALGSNIPE IGVSAWKRHK LDEMTSLCHP PQAVQVTDLA NHPPNIPVCP  180
PIGQSGTQHT TSTHVLMMQG ESIHKASKEK SPLKEVMVPT NKVGMTNSSY GVPNGGGATS  240
SKVVIDSPKG ETAQVFSSQH ACPSLEDNYV IPIPAGHGDS FRTLDEANIP QLHQEQKNFI  300
SQDAIVGENI PLNESLEKSK HKDEDLLFPD KDLPE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0972780.0AC097278.6 Oryza sativa chromosome 10 BAC OSJNBa0040E17 genomic sequence, complete sequence.
GenBankAK2889610.0AK288961.1 Oryza sativa Japonica Group cDNA, clone: J090084F09, full insert sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613386.10.0uncharacterized protein LOC4348238
TrEMBLA0A0E0QX580.0A0A0E0QX58_ORYRU; Uncharacterized protein
TrEMBLQ8LMX60.0Q8LMX6_ORYSJ; Histone-like transcription factor and archaeal histone family protein, expressed
STRINGORUFI10G04960.10.0(Oryza rufipogon)
STRINGOS10T0191900-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139681528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.21e-18nuclear factor Y, subunit C2