PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI10G04240.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 436aa    MW: 48961.8 Da    PI: 4.4884
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI10G04240.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM98.59.7e-31331651128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkya.tgkrknra.....tksgyWkatg 87 
                      l pG++F P+deelv++yL+ k+e+++l++ ++i+evdi++++P +L +k+k+ +ek+wyfF+ r+ +++ +++++nr+     +++g W+atg
  ORUFI10G04240.1  33 LSPGYHFVPSDEELVDFYLRGKIEQRRLPM-DFINEVDIMSFDPVKLIEKYKGyGEKRWYFFTVRKPSKTkKKDEPNRKvvvdgVEEGSWSATG 125
                      579***************************.99**************8555544889*****9988766615779999656666679******* PP

              NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +   ++ k +++++g+k++L++   +a+++e+ +W mhey +
  ORUFI10G04240.1 126 SVAYICGKdHETVIGTKRVLTYK--SARSAEEDKWSMHEYVM 165
                      ******99667779********9..5666669********75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-3425173IPR003441NAC domain
PROSITE profilePS5100532.70433195IPR003441NAC domain
PfamPF023655.9E-1835164IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MTAESNGGNS SSVATTASNG GRRRHELVPK LRLSPGYHFV PSDEELVDFY LRGKIEQRRL  60
PMDFINEVDI MSFDPVKLIE KYKGYGEKRW YFFTVRKPSK TKKKDEPNRK VVVDGVEEGS  120
WSATGSVAYI CGKDHETVIG TKRVLTYKSA RSAEEDKWSM HEYVMLDKSQ LKQTYEAEKK  180
AQEEEERGVK RKRTATRKWR KGDIDQTTSQ EQEDQQQEAP PSGDPHDQSV VDAPYYSMQM  240
TLGGEEEVAP VPWCADCMAQ PDRIEYPAVW YNQQEQQPLQ LGDRSMMTQG YIGDLSYIQN  300
QFDQQQAHDH GSINAFDEAL DQCHDTNFAW DNAGIYPGNN LLDGNLDDDT QDQFGNQATL  360
GALTGELEYG TGYQFHDALQ ATPGSDDASA QSMGIQPAAG HSMGDDDETC CNDDLSSLLA  420
DISRILLDGN GVINKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-17201652140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0QWW80.0A0A0E0QWW8_ORYRU; Uncharacterized protein
STRINGORUFI10G04240.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115562137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.13e-22NAC domain containing protein 94