PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI10G00650.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family BBR-BPC
Protein Properties Length: 290aa    MW: 32117.8 Da    PI: 10.6663
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI10G00650.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind3083.3e-9412901301
        GAGA_bind   1 mdddgsre....rnkg.yyepaaslkenlglqlmssia.erdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllve 88 
                      m+dd+s++    r +g +yep    ++nlglqlmss++ +rd+k       ls++   ++++  ++       +++++ +++rd    a+    
  ORUFI10G00650.1   1 MNDDASMSsmglRGWGaFYEPP---ARNLGLQLMSSVPaDRDTKHL-----LSATPFLHHHQHQQY-----VPHHHHQPHHPRDCGTNANAN-- 79 
                      777777766778****9***99...88**********989998754.....455555666666777.....333345577788876655544.. PP

        GAGA_bind  89 nslasalpvgvqvlsgtksidslqqlse..pqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvk 179
                          + ++vg+++++ t+++ +lq++ e  pql++++ +  ++ee+++ + +ee++    + + +kkrq++++pk+ + kk+kk s+++ ++ +
  ORUFI10G00650.1  80 ---GNGNGVGYGMMPATHTLRMLQHQPEpqPQLQHPPSPpHPKEECISPPLMEENV--PVKPPPPKKRQQGRQPKVLRPKKPKK-SAAPCEDGA 167
                      ...345799************99997666799*99999978999999888877755..5678899999****************.889999999 PP

        GAGA_bind 180 kesad.erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekL 272
                      ++sa+ +r++ ++k+i++v+ng++lD s++P+ +CsCtGa++q Y+WG+GGWqSaCCttt+S+yPLP+s k rgaRiagrKmS+gafkk+LekL
  ORUFI10G00650.1 168 PPSAPaPRRRGPRKNIGMVINGIDLDLSRIPTRICSCTGAPQQRYRWGAGGWQSACCTTTVSTYPLPMSMKPRGARIAGRKMSHGAFKKVLEKL 261
                      999999**************************************************************************************** PP

        GAGA_bind 273 aaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                      a+eGy+l+np+DLk++WAkHGtnkfvtir
  ORUFI10G00650.1 262 ASEGYNLNNPIDLKTFWAKHGTNKFVTIR 290
                      ****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062171.1E-1061290IPR010409GAGA-binding transcriptional activator
SMARTSM012265.5E-1711290IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MNDDASMSSM GLRGWGAFYE PPARNLGLQL MSSVPADRDT KHLLSATPFL HHHQHQQYVP  60
HHHHQPHHPR DCGTNANANG NGNGVGYGMM PATHTLRMLQ HQPEPQPQLQ HPPSPPHPKE  120
ECISPPLMEE NVPVKPPPPK KRQQGRQPKV LRPKKPKKSA APCEDGAPPS APAPRRRGPR  180
KNIGMVINGI DLDLSRIPTR ICSCTGAPQQ RYRWGAGGWQ SACCTTTVST YPLPMSMKPR  240
GARIAGRKMS HGAFKKVLEK LASEGYNLNN PIDLKTFWAK HGTNKFVTIR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152158PKKPKKS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5705210.0AY570521.1 Oryza sativa (japonica cultivar-group) barley B recombinant like protein C mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614002.10.0barley B recombinant-like protein C
SwissprotQ7XH850.0BBRC_ORYSJ; Barley B recombinant-like protein C
TrEMBLA0A0E0QVN90.0A0A0E0QVN9_ORYRU; Uncharacterized protein
STRINGORUFI10G00650.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22113697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.31e-56basic pentacysteine 2
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]