PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI09G21750.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

BES1

Protein Properties

Length: 586aa MW: 66682 Da PI: 5.1797

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI09G21750.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	124.2	1.7e-38	45	118	3	76
DUF822 3 sgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl 76 ++r + +E+E++k+RER+RRai+a+i+aGLR++Gny+l++raD+neV++AL+reAGwvv +DGtt++ +s+ ORUFI09G21750.1 45 GRRGRAREEKERTKLRERQRRAITARILAGLRRHGNYNLRVRADINEVIAALAREAGWVVLPDGTTFPSSSSSV 118 57888899************************************************************877665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	5.4E-35	46	119	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	1.22E-187	143	582	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	1.0E-205	146	580	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	9.1E-115	152	570	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.2E-77	183	197	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.2E-77	204	222	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.2E-77	226	247	IPR001554	Glycoside hydrolase, family 14
PROSITE pattern	PS00506	0	230	238	IPR018238	Glycoside hydrolase, family 14, conserved site
PRINTS	PR00842	8.4E-9	309	318	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00750	3.2E-77	319	341	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.2E-77	392	411	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.2E-77	426	442	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.2E-77	443	454	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.2E-77	461	484	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00842	8.4E-9	464	474	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00750	3.2E-77	501	523	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00842	8.4E-9	552	566	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00842	8.4E-9	567	581	IPR001371	Glycoside hydrolase, family 14B, plant

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0009570	Cellular Component	chloroplast stroma
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 586 aa Download sequence Send to blast
MQQQQQAMEE DGVKEEEEEY YLEEEDEGEE ETRPPLQQQQ QVGLGRRGRA REEKERTKLR 60 ERQRRAITAR ILAGLRRHGN YNLRVRADIN EVIAALAREA GWVVLPDGTT FPSSSSSVSQ 120 PPPTQQQLQV PDLLPPRPPE RDFAGTPYVP VYVMLPLGVV NGNGEVVDAD VLVGQLRVLK 180 AAGVDGVMVD CWWGNVEAHR PQEYNWTGYK RLFHMIRELK LKLQVVMSFH ECGGNVGDDV 240 SIPLPHWVTE IGRSNPDIYF TDRAGRRNTE CLSWGIDKER VLQGRTGVEV YFDYMRSFRV 300 EFDEYFEDGI ISEIEIGLGA CGELRYPSYP AKHGWKYPGI GEFQCYDRYL QKSLRRAAEA 360 RGHTIWARAP DSAGHYNSEP NLTGFFSDGG DYDSYYGRFF LNWYSQVLVD HADRVLMLAR 420 LAFEGSDIAV KVSGVHWWYK TASHAAELTA GFYNPCNRDG YASIAAVLKK HGAALNFTCV 480 ELRTMDQHEV FPEAFADPEG LVWQVLNAAW DAGIPVASEN ALPCYDRDGF NKILENAKPL 540 NDPDGRHLLG FTYLRLTKVL FERANFLEFE RFVKRMHGEA VLDLQV

Sequence ? help Back to Top

Protein Sequence Length: 586 aa Download sequence Send to blast

MQQQQQAMEE DGVKEEEEEY YLEEEDEGEE ETRPPLQQQQ QVGLGRRGRA REEKERTKLR  60
ERQRRAITAR ILAGLRRHGN YNLRVRADIN EVIAALAREA GWVVLPDGTT FPSSSSSVSQ  120
PPPTQQQLQV PDLLPPRPPE RDFAGTPYVP VYVMLPLGVV NGNGEVVDAD VLVGQLRVLK  180
AAGVDGVMVD CWWGNVEAHR PQEYNWTGYK RLFHMIRELK LKLQVVMSFH ECGGNVGDDV  240
SIPLPHWVTE IGRSNPDIYF TDRAGRRNTE CLSWGIDKER VLQGRTGVEV YFDYMRSFRV  300
EFDEYFEDGI ISEIEIGLGA CGELRYPSYP AKHGWKYPGI GEFQCYDRYL QKSLRRAAEA  360
RGHTIWARAP DSAGHYNSEP NLTGFFSDGG DYDSYYGRFF LNWYSQVLVD HADRVLMLAR  420
LAFEGSDIAV KVSGVHWWYK TASHAAELTA GFYNPCNRDG YASIAAVLKK HGAALNFTCV  480
ELRTMDQHEV FPEAFADPEG LVWQVLNAAW DAGIPVASEN ALPCYDRDGF NKILENAKPL  540
NDPDGRHLLG FTYLRLTKVL FERANFLEFE RFVKRMHGEA VLDLQV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1btc_A	1e-160	148	579	7	440	BETA-AMYLASE
1bya_A	1e-160	148	579	11	444	BETA-AMYLASE
1byb_A	1e-160	148	579	11	444	BETA-AMYLASE
1byc_A	1e-160	148	579	11	444	BETA-AMYLASE
1byd_A	1e-160	148	579	11	444	BETA-AMYLASE
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Low beta-amylase activity. Interacts poorly with starch or other alpha-1,4-glucan. {ECO:0000269\|PubMed:18390594, ECO:0000269\|PubMed:19664588}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly by cold stress. {ECO:0000269\|PubMed:16297066}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK070300	0.0	AK070300.1 Oryza sativa Japonica Group cDNA clone:J023048N01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015696458.1	0.0	PREDICTED: LOW QUALITY PROTEIN: beta-amylase 2, chloroplastic-like
Swissprot	O65258	0.0	BAM2_ARATH; Beta-amylase 2, chloroplastic
TrEMBL	A0A0E0QVA7	0.0	A0A0E0QVA7_ORYRU; Beta-amylase
STRING	ORUFI09G21750.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2141	36	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45880.1	0.0	beta-amylase 7

Publications ? help Back to Top
Smith AM,Zeeman SC,Smith SM Starch degradation. Annu Rev Plant Biol, 2005. 56: p. 73-98 [PMID:15862090] Lundmark M,Cavaco AM,Trevanion S,Hurry V Carbon partitioning and export in transgenic Arabidopsis thaliana with altered capacity for sucrose synthesis grown at low temperature: a role for metabolite transporters. Plant Cell Environ., 2006. 29(9): p. 1703-14 [PMID:16913860] Li J, et al. Catalytically-inactive beta-amylase BAM4 required for starch breakdown in Arabidopsis leaves is a starch-binding-protein. Arch. Biochem. Biophys., 2009. 489(1-2): p. 92-8 [PMID:19664588] Andriotis VM,Pike MJ,Kular B,Rawsthorne S,Smith AM Starch turnover in developing oilseed embryos. New Phytol., 2010. 187(3): p. 791-804 [PMID:20546137] Monroe JD, et al. Arabidopsis β-Amylase2 Is a K+-Requiring, Catalytic Tetramer with Sigmoidal Kinetics. Plant Physiol., 2017. 175(4): p. 1525-1535 [PMID:29066669]