PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI09G21220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HB-other | ||||||||
Protein Properties | Length: 128aa MW: 13902.6 Da PI: 12.7668 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 24.9 | 3.5e-08 | 94 | 121 | 22 | 49 |
SSS--HHHHHHHHHHCTS-HHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFq 49 + +ps+ +r+ LA++l+L+ qV vWFq ORUFI09G21220.1 94 STTPSTLRRRWLARQLNLKPPQVEVWFQ 121 679************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.4E-6 | 94 | 121 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.5E-5 | 94 | 121 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-6 | 95 | 121 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
XXXXXXXXXR AVPPVWPPLA ALEWRPRWAG PSGCRPPRPP PTARSPASAA SAARHLPPPP 60 LAAAATTRTP AADPARSSAS RRTKPPSSTT PSKSTTPSTL RRRWLARQLN LKPPQVEVWF 120 QTGGRERS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012617 | 1e-126 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0QV37 | 2e-70 | A0A0E0QV37_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI09G21220.1 | 3e-71 | (Oryza rufipogon) |