PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI09G20530.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 599aa MW: 67069.4 Da PI: 5.4016 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 173.8 | 5e-54 | 116 | 245 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeelv++yLk+k++g k+el ++i+evd+yk+ePw+L k + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd++v ORUFI09G20530.1 116 LPPGFRFHPTDEELVNYYLKRKIHGLKIEL-DIIPEVDLYKCEPWELAeKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRV 208 79****************************.99**************84335556888************************************ PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +g+++g+kktLv+y+grap+g++tdWvmheyrl ORUFI09G20530.1 209 VHQhGGRAIGMKKTLVYYRGRAPQGVRTDWVMHEYRL 245 99978899***************************98 PP | |||||||
2 | NAM | 172.8 | 1e-53 | 388 | 515 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeelv++yLk+kv+g +++l ++i+evd+yk+ePw+L+ k + ++++ewyfF +rd+ky++g r+nrat++gyWk+tgkd+++ ORUFI09G20530.1 388 LPPGFRFHPTDEELVNYYLKRKVHGLSIDL-DIIPEVDLYKCEPWELEeKsFLPSKDSEWYFFGPRDRKYPNGCRTNRATRAGYWKSTGKDRRI 480 79****************************.99**************84345566899************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +g+kktLv+ykgrap+g +t+Wvmheyr+ ORUFI09G20530.1 481 NY-QNRSIGMKKTLVYYKGRAPQGIRTSWVMHEYRI 515 *9.8899***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.92E-64 | 107 | 268 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.845 | 116 | 268 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.3E-29 | 117 | 245 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.96E-62 | 381 | 538 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.297 | 388 | 538 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.8E-29 | 389 | 515 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 599 aa Download sequence Send to blast |
MEKVQASCEG DQGICKRGAK GGHPIDQNLV GGMTMSTGVP TTVPPTPALA ALKNLLIRVV 60 AAAAGKGLSS SAEEARCLWA KLPAPEEEEE AGQQPERPPS SYRRPPTSTL MAPVGLPPGF 120 RFHPTDEELV NYYLKRKIHG LKIELDIIPE VDLYKCEPWE LAEKSFLPSR DPEWYFFGPR 180 DRKYPNGFRT NRATRAGYWK STGKDRRVVH QHGGRAIGMK KTLVYYRGRA PQGVRTDWVM 240 HEYRLDDKDC EDTMPIKDTY ALCRVFKKNA ICTEVEELQG QCSMALLEGA CQQLLASGGG 300 GSQEQYETPS PPDVPVGSTS GGADADAEDD PDKDDSWMQF ISDDAWCSST ADGGAEESTS 360 CRIAGVGGLM PEARKEEANW EAMAPVGLPP GFRFHPTDEE LVNYYLKRKV HGLSIDLDII 420 PEVDLYKCEP WELEEKSFLP SKDSEWYFFG PRDRKYPNGC RTNRATRAGY WKSTGKDRRI 480 NYQNRSIGMK KTLVYYKGRA PQGIRTSWVM HEYRIEESEC ENAMGIQDSY ALCRIFKKNV 540 VLGEFDKKGE CSSSQAKGNE EQVTDFGDAG QSSGANENDK DNSWMQFIAE DLWCTNKLK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-51 | 111 | 539 | 10 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-51 | 111 | 539 | 10 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-51 | 111 | 539 | 10 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-51 | 111 | 539 | 10 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-51 | 111 | 539 | 13 | 170 | NAC domain-containing protein 19 |
3swm_B | 2e-51 | 111 | 539 | 13 | 170 | NAC domain-containing protein 19 |
3swm_C | 2e-51 | 111 | 539 | 13 | 170 | NAC domain-containing protein 19 |
3swm_D | 2e-51 | 111 | 539 | 13 | 170 | NAC domain-containing protein 19 |
3swp_A | 2e-51 | 111 | 539 | 13 | 170 | NAC domain-containing protein 19 |
3swp_B | 2e-51 | 111 | 539 | 13 | 170 | NAC domain-containing protein 19 |
3swp_C | 2e-51 | 111 | 539 | 13 | 170 | NAC domain-containing protein 19 |
3swp_D | 2e-51 | 111 | 539 | 13 | 170 | NAC domain-containing protein 19 |
4dul_A | 2e-51 | 111 | 539 | 10 | 167 | NAC domain-containing protein 19 |
4dul_B | 2e-51 | 111 | 539 | 10 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00363 | DAP | Transfer from AT3G17730 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC137596 | 0.0 | AC137596.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 9 clone OSJNBb0031H05, complete sequence. | |||
GenBank | AP005564 | 0.0 | AP005564.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1228_C03, complete sequence. | |||
GenBank | AP014965 | 0.0 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015612702.2 | 0.0 | NAC domain-containing protein 86 | ||||
Swissprot | Q9FFI5 | 6e-84 | NAC86_ARATH; NAC domain-containing protein 86 | ||||
TrEMBL | A0A0E0QUU9 | 0.0 | A0A0E0QUU9_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI09G20530.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3713 | 38 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G17730.1 | 1e-109 | NAC domain containing protein 57 |
Publications ? help Back to Top | |||
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