PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI09G16990.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | SBP | ||||||||
Protein Properties | Length: 161aa MW: 16426.7 Da PI: 8.5065 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 71 | 2.2e-22 | 115 | 161 | 2 | 48 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 C v+gC+adls+ ++yhrrhkvCe hsk+pvv+vsg+e rfCqqCsr ORUFI09G16990.1 115 CAVDGCKADLSKHRDYHRRHKVCEPHSKTPVVVVSGREMRFCQQCSR 161 **********************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 9.4E-26 | 107 | 161 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 19.948 | 112 | 161 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 6.02E-21 | 113 | 161 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 5.4E-18 | 115 | 161 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MDWDLKMPVS WDLAELEHNA VPNMAAAASA AEPGIAAVAA SRGAPGRPEC SVDLKLGGLG 60 EFGAADALKE PAAAAKAPVS SAAAAASVAK VPPSTSTLKR PRGGGGGGGG QCPSCAVDGC 120 KADLSKHRDY HRRHKVCEPH SKTPVVVVSG REMRFCQQCS R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj0_A | 6e-16 | 115 | 161 | 6 | 52 | squamosa promoter-binding protein-like 12 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC108759 | 0.0 | AC108759.2 Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0072P02, complete sequence. | |||
GenBank | AP014965 | 0.0 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015610873.1 | 1e-110 | squamosa promoter-binding-like protein 18 isoform X1 | ||||
Refseq | XP_015610874.1 | 1e-110 | squamosa promoter-binding-like protein 18 isoform X2 | ||||
Swissprot | Q0J0K1 | 1e-111 | SPL18_ORYSJ; Squamosa promoter-binding-like protein 18 | ||||
TrEMBL | A0A0E0B518 | 1e-108 | A0A0E0B518_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0IM49 | 1e-109 | A0A0E0IM49_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0QTH8 | 1e-111 | A0A0E0QTH8_ORYRU; Uncharacterized protein | ||||
STRING | OGLUM09G16320.1 | 1e-109 | (Oryza glumipatula) | ||||
STRING | ORUFI09G16990.1 | 1e-112 | (Oryza rufipogon) | ||||
STRING | OS09T0507100-00 | 1e-109 | (Oryza sativa) | ||||
STRING | ONIVA09G16860.1 | 1e-110 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1755 | 37 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27370.4 | 8e-20 | squamosa promoter binding protein-like 10 |