PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI09G16180.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 739aa MW: 81113.5 Da PI: 4.597 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 145.5 | 2.8e-45 | 48 | 180 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 ppGfrF+Ptdeelv ++Lk+++++ + + i++vd+yk++P++Lp+ ++++++k+w+fFs+ d+ky++g+r++r+t +gyWkatgkd++++ ORUFI09G16180.1 48 PPGFRFSPTDEELVLYFLKRRIATGRPTP--YIADVDVYKSHPSHLPErsALRTGDKQWFFFSRMDRKYPNGSRASRTTGEGYWKATGKDRSIC 139 8*********************9999555..6**************9435778899************************************** PP NAM 94 sk......kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +g++vg kktLv+++grap+ge++dWvmhey+l ORUFI09G16180.1 140 NGggggtaSGRAVGSKKTLVYHHGRAPRGERSDWVMHEYTL 180 *98877777777***************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-51 | 43 | 203 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.357 | 47 | 203 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.2E-24 | 48 | 180 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070301 | Biological Process | cellular response to hydrogen peroxide | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005789 | Cellular Component | endoplasmic reticulum membrane | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 739 aa Download sequence Send to blast |
MGPDPEGVEL TRHFAISSRG CCASHQPIPA AAAEETEMGM ENPPLRWPPG FRFSPTDEEL 60 VLYFLKRRIA TGRPTPYIAD VDVYKSHPSH LPERSALRTG DKQWFFFSRM DRKYPNGSRA 120 SRTTGEGYWK ATGKDRSICN GGGGGTASGR AVGSKKTLVY HHGRAPRGER SDWVMHEYTL 180 LADALPPAAR DREAYALYKL FHKSGAGPKN GEQYGAPFRE EDWLDDDDHH HDQLPAEAAL 240 PAPATTSGRA ATTEEHADFE LPGGDLDVLL AQIENDQDII EAQLDFSTHV TSQVQIQHRV 300 HQGWLSDDGG KSDVADATTS GSALLMAENT CAELPIDGLE QLLMQISDDQ QTVEMLSGFS 360 ASVPQSQLQH DYHQGCLGVH REEVGVADST TVSSAVVTEE CTVRELQDIE GLLMQIENDQ 420 ENAESLPDFS TPVHLHDCHQ AAFGDFQGSQ RATFNIANLS TMVQESPNFD LQTGPSNQIT 480 ESILTTEPMN GETNAVEETS PLRSMSVLGS YDRQDGDDEF LEINDFFDPE DLEQILGSTR 540 SQNLIPADDG VFDSLQYSDA PMFLPGSFDR TGVVAENHYV EFGASGIQNQ GFQHTTELLA 600 HNQVALNVRN HMKDNHVVFS HSSDATIIHT VNEQPPNRSS NASQSWFNGA LSALLDSVPS 660 SPAMAAENIG LNRTLQRISS FRSQQPAREE VSSTLINTRR RGGGLIFISL MVLLVAIMWT 720 FSNGSAVKLS KGLWKFPST |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-42 | 45 | 180 | 13 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00179 | DAP | Transfer from AT1G34190 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068501 | 0.0 | AK068501.1 Oryza sativa Japonica Group cDNA clone:J013155B08, full insert sequence. | |||
GenBank | AK099237 | 0.0 | AK099237.1 Oryza sativa Japonica Group cDNA clone:J013112C23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015611740.1 | 0.0 | NAC domain-containing protein 17 isoform X1 | ||||
TrEMBL | A0A0E0QT65 | 0.0 | A0A0E0QT65_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI09G16180.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9128 | 28 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34180.1 | 6e-62 | NAC domain containing protein 16 |