PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI09G14280.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

ZF-HD

Protein Properties

Length: 269aa MW: 28622.2 Da PI: 7.3817

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI09G14280.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	98.7	4.4e-31	55	108	4	58
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 rY+eClkNhA+ +GghavDGCgEfm++ geegt++al+CaAC+CHRnFHR+e+e ORUFI09G14280.1 55 GRYRECLKNHAVGIGGHAVDGCGEFMAA-GEEGTIDALRCAACNCHRNFHRKESE 108 59***********************9.999******************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	2.0E-37	36	109	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	6.5E-30	56	106	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	7.0E-29	56	107	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.647	57	106	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	1.08E-20	196	266	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.8E-33	198	266	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	9.4E-27	205	261	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MDFDDHDDCD EEMPPMPVSS SYETPPQHGL AGGGMAPKPP GEIGSRVKGP SCGGGRYREC 60 LKNHAVGIGG HAVDGCGEFM AAGEEGTIDA LRCAACNCHR NFHRKESESL AGEGSPFSPA 120 AVVPYGATPH HQFSPYYRPE GRSPPLPPPP PAGGHPQRPL ALPSTSHSGR DDGDDLSGMV 180 GPMSAVGPLS GMSLGAGPSG SGSGKKRFRT KFTQEQKDKM LAFAERVGWR IQKHDEAAVQ 240 QFCDEVGVKR HVLKVWMHNN KHTLGKKLP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	7e-30	206	263	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK108246	0.0	AK108246.1 Oryza sativa Japonica Group cDNA clone:002-140-H06, full insert sequence.
GenBank	AP005676	0.0	AP005676.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1005_D12.
GenBank	AP014965	0.0	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015610854.1	1e-163	zinc-finger homeodomain protein 1
Swissprot	Q6YXH5	1e-164	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	A0A0E0QSI9	0.0	A0A0E0QSI9_ORYRU; Uncharacterized protein
STRING	ORUFI09G14280.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3950	32	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02540.1	3e-57	homeobox protein 21

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]