PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI09G12180.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 396aa    MW: 42630.9 Da    PI: 4.6302
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI09G12180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.8e-19135184255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+G+r+++ +g+W+AeIrdps+     r++lg++ taeeAa+a++a ++k++g
  ORUFI09G12180.1 135 QYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTYNTAEEAARAYDAEARKIRG 184
                      69*******.**********965...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.88E-32135193No hitNo description
Gene3DG3DSA:3.30.730.101.5E-32135193IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-22135193IPR016177DNA-binding domain
PROSITE profilePS5103223.933135192IPR001471AP2/ERF domain
SMARTSM003801.2E-36135198IPR001471AP2/ERF domain
PfamPF008476.6E-12136184IPR001471AP2/ERF domain
PRINTSPR003672.6E-11136147IPR001471AP2/ERF domain
PRINTSPR003672.6E-11158174IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MCGGAIISGF IPPSAAAAAA AAAAKKQQGR RVTADVLWPG MLRKGKAAAA EEDFEADFRE  60
FERGMSDDEA EGGGGEEEEE DDDVVVVVPP PAAARFVVRA AAKAAPPTAD GMLTTKLVQH  120
DGPTARSAKR KRKNQYRGIR QRPWGKWAAE IRDPSKGVRV WLGTYNTAEE AARAYDAEAR  180
KIRGKKAKVN FPDEPAVAQK LSLKQNAAKQ EKLAPPLKTC GDDAFFQLNS SDNDLFAMLA  240
KVPAKPAEPV DLMPPVKPLA STETFEMNML SDTSSNSFGS SDFGWEDDTL TPDYTSVFVP  300
NAAMPAYGEP AYLTGGAPKR MRNNYGIAVP QGNGMPNLAQ NMPTFDPEMK YLPLPYVESS  360
SDESMDNLLQ NDATQDGASN EGIWSLDELL MAAGAY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-20134192160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A9e-20135192563ATERF1
3gcc_A9e-20135192563ATERF1
5wx9_A3e-191351941474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4171990.0DQ417199.1 Oryza sativa (japonica cultivar-group) putative EREBP transcription factor (EREBP) mRNA, complete cds.
GenBankEU8372560.0EU837256.1 Oryza sativa Japonica Group clone KCS059H07 EREBP transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611873.10.0ethylene-responsive transcription factor 1-like
TrEMBLA0A0E0QRT50.0A0A0E0QRT5_ORYRU; Uncharacterized protein
STRINGORUFI09G12180.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112003142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.31e-30related to AP2 12