PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI09G12050.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 129aa    MW: 14109.3 Da    PI: 6.5251
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI09G12050.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-053658123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C++C+k F ++  L  H++ H
  ORUFI09G12050.1 36 FTCTYCDKKFYSSQALGGHQNAH 58
                     89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.66E-72678No hitNo description
PROSITE profilePS5015711.3853663IPR007087Zinc finger, C2H2
PROSITE patternPS0002803858IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MDRYNGGGGG GEEGDEQLDL NLSLQPSQAN EPPGYFTCTY CDKKFYSSQA LGGHQNAHKF  60
ERSVAKRTRE LAAARRQQAA DEEARRGAGT TTTREPTGNA SSSYQRASPP AEARRRDLLT  120
DDIDLSLKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057470.0AP005747.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0039E17.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611311.14e-90zinc finger protein 2
TrEMBLA0A0E0B3B32e-89A0A0E0B3B3_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0IJX78e-89A0A0E0IJX7_ORYNI; Uncharacterized protein
TrEMBLA0A0E0QRS02e-89A0A0E0QRS0_ORYRU; Uncharacterized protein
TrEMBLA0A0P0XNV49e-89A0A0P0XNV4_ORYSJ; Os09g0431900 protein
TrEMBLA2Z1J02e-89A2Z1J0_ORYSI; Uncharacterized protein
TrEMBLA3BZ372e-89A3BZ37_ORYSJ; Os09g0431900 protein
TrEMBLQ69MJ42e-88Q69MJ4_ORYSJ; Uncharacterized protein OSJNBa0039E17.14
STRINGOGLUM09G11630.13e-90(Oryza glumipatula)
STRINGORUFI09G12050.13e-90(Oryza rufipogon)
STRINGOS09T0431900-002e-89(Oryza sativa)
STRINGONIVA09G10990.11e-89(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.14e-15zinc finger protein 2