PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI09G10950.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ZF-HD | ||||||||
Protein Properties | Length: 227aa MW: 23948.9 Da PI: 9.8284 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 105.2 | 4e-33 | 39 | 95 | 4 | 59 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 ++Y+eClkNhAaslGgha+DGCgEfmps+ ++ +++++l+CaACgCHRnFHRr +e ORUFI09G10950.1 39 TVYRECLKNHAASLGGHALDGCGEFMPSPAANpADPTSLRCAACGCHRNFHRRLPEG 95 78*****************************99********************8765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 5.0E-28 | 39 | 92 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 4.0E-24 | 41 | 91 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.752 | 41 | 92 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 6.8E-31 | 41 | 91 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 9.56E-16 | 88 | 153 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.2E-27 | 93 | 154 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.1E-23 | 96 | 151 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MEAMDVKYKP LVFPNGAIKK AAKPAAVAPA VGGGGGGETV YRECLKNHAA SLGGHALDGC 60 GEFMPSPAAN PADPTSLRCA ACGCHRNFHR RLPEGKRFRT KFTAEQKQRM QELSERLGWR 120 LQKRDEAIVD EWCRDIGVGK GVFKVWMHNN KHNYLGGHSA RRSASSSSAA AAAAAAPPFN 180 PPTNHTSPPP PPPPPHATDF NINGTATAAT AAAGNHQENG ASSPQSA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-19 | 96 | 153 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK069500 | 1e-166 | AK069500.1 Oryza sativa Japonica Group cDNA clone:J023022H01, full insert sequence. | |||
GenBank | AP005636 | 1e-166 | AP005636.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0707C02. | |||
GenBank | AP014965 | 1e-166 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020594427.1 | 8e-62 | zinc-finger homeodomain protein 9-like | ||||
Swissprot | Q6ER21 | 1e-48 | ZHD9_ORYSJ; Zinc-finger homeodomain protein 9 | ||||
TrEMBL | A0A0E0QRE2 | 1e-166 | A0A0E0QRE2_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI09G10950.1 | 1e-167 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3646 | 33 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 3e-36 | homeobox protein 22 |