PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI09G10740.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 238aa MW: 25528.2 Da PI: 6.1691 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 47.1 | 7.9e-15 | 23 | 68 | 1 | 47 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL 47 lppGfrF+Ptd elv +yL++k+++ ++ +i+++d+y++ePwdL ORUFI09G10740.1 23 LPPGFRFRPTDGELVAHYLARKAADAGFTS-AAIRDADLYRAEPWDL 68 79*************************999.78*************9 PP | |||||||
2 | NAM | 43.5 | 1e-13 | 78 | 109 | 97 | 128 |
NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 g+ vg+kktLvfy+grap+gekt+Wvmheyrl ORUFI09G10740.1 78 GRPVGVKKTLVFYRGRAPRGEKTSWVMHEYRL 109 6789**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 18.714 | 1 | 141 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.18E-35 | 14 | 141 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.5E-15 | 24 | 109 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MAGGGGGDRA PSSSSTAMIS RLLPPGFRFR PTDGELVAHY LARKAADAGF TSAAIRDADL 60 YRAEPWDLLP PPRXGGGGRP VGVKKTLVFY RGRAPRGEKT SWVMHEYRLL HGGAAATASS 120 SPTPTTVVAR SEWVICRVFV RKTPDGNNDR GTTEHHLPSD DAHLRSSPAP ANSVDGAGHA 180 SCSFFSGANE SMAPSDHFNI GDDMILHGHD EEELLMMNCS SAFDLPELLD YESFSLDL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-24 | 23 | 143 | 15 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK064191 | 0.0 | AK064191.1 Oryza sativa Japonica Group cDNA clone:002-104-C09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015611185.1 | 1e-140 | NAC domain-containing protein 79 | ||||
TrEMBL | A0A0E0QRB9 | 1e-172 | A0A0E0QRB9_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI09G10740.1 | 1e-173 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15352 | 16 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18400.1 | 4e-29 | NAC domain containing protein 58 |