PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI09G10670.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 363aa    MW: 37754.9 Da    PI: 5.6113
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI09G10670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.81.1e-14108154354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r+h+e+ErrRR+riN  +++Lr+llP+      +K +Ka+ L +++e++k+L
  ORUFI09G10670.1 108 RSHSEAERRRRQRINGHLARLRSLLPNT-----TKTDKASLLAEVIEHVKEL 154
                      78*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.066105154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-12108154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.03E-13108157No hitNo description
SuperFamilySSF474591.57E-14109159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-14109161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.8E-14111160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2603.0E-6217264No hitNo description
SuperFamilySSF550216.41E-5217264No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MWEGGSHDAA AQLLPWFVGE PAAAAVGGYG GCVDVVGQGG VFGFGFEAAA APVVTRQQRG  60
GAAAAEGSSR GGGGKPAVVS GLLGSLQAEL GRVTAREIMD AKALAASRSH SEAERRRRQR  120
INGHLARLRS LLPNTTKTDK ASLLAEVIEH VKELKRQTTA IAAAAAAGDY HGNDEDDDDA  180
VVGRRSAAAQ QLLPTEADEL AVDAAVDAEG KLVVRASLCC EDRPDLIPDI ARALAALRLR  240
ARRAEITTLG GRVRSVLLIT ADEQQQQHCD DVDDDEDGHR LLLRHGIDGA GAAADDDDEC  300
AASHRRHECI ATVQEALRGV MDRRAAASSG DTSSSGGAVV AGGGGGSIKR QRMNYGVHEQ  360
CSV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0050930.0AP005093.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1294_G06.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651269.10.0transcription factor bHLH30
TrEMBLA0A0E0QRB20.0A0A0E0QRB2_ORYRU; Uncharacterized protein
TrEMBLQ6ESL30.0Q6ESL3_ORYSJ; DNA binding protein-like
STRINGORUFI09G10670.10.0(Oryza rufipogon)
STRINGOS09T0410700-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-38bHLH family protein