PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI09G08190.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 564aa    MW: 60959.1 Da    PI: 8.6772
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI09G08190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM29.81.7e-091282278
              NAM  2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknrat 78
                      pG + +P+d+elv  yL ++++g++l+l     e+d +++ P++L +  +++ +e +f +++++k+a+gkr++ ++
  ORUFI09G08190.1 12 LPGPKLDPSDDELVGGYLLRRLQGQPLPL-----EADPLSARPRNLAAD-HGRGDEAFFLAEAHSKNAKGKRQRSIV 82
                     7999**********************999.....79**********844.4567899************99998754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.81E-10483IPR003441NAC domain
SuperFamilySSF530986.32E-13238366IPR012337Ribonuclease H-like domain
PROSITE profilePS5087910.062242367IPR002156Ribonuclease H domain
CDDcd062228.01E-24242363No hitNo description
PfamPF134562.7E-34243365No hitNo description
Gene3DG3DSA:3.30.420.102.6E-5244366IPR012337Ribonuclease H-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0090502Biological ProcessRNA phosphodiester bond hydrolysis, endonucleolytic
GO:0003677Molecular FunctionDNA binding
GO:0004523Molecular FunctionRNA-DNA hybrid ribonuclease activity
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MAAAAAGADG LLPGPKLDPS DDELVGGYLL RRLQGQPLPL EADPLSARPR NLAADHGRGD  60
EAFFLAEAHS KNAKGKRQRS IVEGQSMCVD GGRLHVPDDG RGGGGLAFSH FLPLSPSILP  120
SPAPSPRCST STPLSPRKLL ADHGRGDEAA FLADAWAKNG KRQKQRSTVE GGVLWQGQGM  180
LVDGERLRVA DDGGCGGSTF LPPPSPLTAP RCSTPLSPSS PPFRPSRVIV RWARPPPGWC  240
KLNFDGSVFN DGSRRASIGG VIRDSDAGVV LAFAETTEHW TVGVVEARAM IRGLRFALAC  300
FIERLVVEGD DLVLVQLIRG EETQTRIPAA MQEEILNLLR CFAEVDVRHI YREGNSVAHT  360
LCRQAYVCPG IWSQRGGGMP AAVWDKVDDD RRGVVHERIR KNNGSVLGAV QTQRGVAKRF  420
AQTDTVAHSK TGTGSALEQI LVVSCWFYHQ WCHYSSIEMK LEMNKVMRQW KWAPPPVGWC  480
KLNFDGSVFN DGSRRASIGG VIRGCDGGVV LAFAETTEHW TVGVVEXRST RIVAGCCTSA  540
CARRTSDAIG MKKGGRDRCG RQSD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17378KGKRQR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1354240.0AC135424.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0015F11, complete sequence.
GenBankAC1447420.0AC144742.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0052F16, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881581.11e-122uncharacterized protein LOC112939071
TrEMBLA0A0E0QQG60.0A0A0E0QQG6_ORYRU; Uncharacterized protein
STRINGORUFI09G08190.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2550713