PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI09G08020.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 359aa MW: 37466.4 Da PI: 5.2887

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI09G08020.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	117.5	8.1e-37	69	168	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 aCaaCk++rrkC++dC+la+yfpa+++++f n+h+lFG+s+++k+l+++p+e + dam++l++eA+ara+dPv Ga++v+ +l +q+e l+ael ORUFI09G08020.1 69 ACAACKYQRRKCNADCPLARYFPADEQRRFLNAHHLFGVSKIQKTLRDTPPELHADAMQALTFEANARASDPVGGAARVVVELCRQYEMLHAEL 162 7******************************************************************************************* PP DUF260 95 allkee 100 a+++++ ORUFI09G08020.1 163 AAVQHH 168 *997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.79	68	169	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-33	69	166	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MTASSSTTNS SSSVSTADTS SSNPPPQHAL HRQHIASSSA SSGGGGAAAP LPPRAPPRVG 60 GGGVGQSQAC AACKYQRRKC NADCPLARYF PADEQRRFLN AHHLFGVSKI QKTLRDTPPE 120 LHADAMQALT FEANARASDP VGGAARVVVE LCRQYEMLHA ELAAVQHHLK LCRQQHAAAA 180 AAAANDPLVA NVDPLADPAA EMLFAGAVVP NQNDDAMVDA FYADQQTAGD GDQEQYLVKD 240 EALAAQPPPQ QPYEYLNYGT AGDEGSSHAW YTGNGGDADA SPPMGLSDQL QQCQIGAAPP 300 FDVKPELPAT MEHGGSVFVE QPEQKILPAA GSSSSAAAHC QLELGCSSNA WKVGTHVIN

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MTASSSTTNS SSSVSTADTS SSNPPPQHAL HRQHIASSSA SSGGGGAAAP LPPRAPPRVG  60
GGGVGQSQAC AACKYQRRKC NADCPLARYF PADEQRRFLN AHHLFGVSKI QKTLRDTPPE  120
LHADAMQALT FEANARASDP VGGAARVVVE LCRQYEMLHA ELAAVQHHLK LCRQQHAAAA  180
AAAANDPLVA NVDPLADPAA EMLFAGAVVP NQNDDAMVDA FYADQQTAGD GDQEQYLVKD  240
EALAAQPPPQ QPYEYLNYGT AGDEGSSHAW YTGNGGDADA SPPMGLSDQL QQCQIGAAPP  300
FDVKPELPAT MEHGGSVFVE QPEQKILPAA GSSSSAAAHC QLELGCSSNA WKVGTHVIN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-20	65	169	7	111	LOB family transfactor Ramosa2.1
5ly0_B	1e-20	65	169	7	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005675	0.0	AP005675.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1001_G09.
GenBank	AP014965	0.0	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015611163.2	0.0	protein IAL1
TrEMBL	A0A0E0QQE9	0.0	A0A0E0QQE9_ORYRU; Uncharacterized protein
STRING	ORUFI09G08020.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18293	10	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72980.1	2e-25	LOB domain-containing protein 7