PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI09G05390.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 397aa    MW: 41513.7 Da    PI: 7.9199
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI09G05390.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.8e-05200219120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      ++C  C+k+F+r  n++ H+
  ORUFI09G05390.1 200 FSCAVCNKTFNRFNNMQMHM 219
                      89*****************9 PP
2zf-C2H213.50.00021291313123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y C  Cgk+F  + + ++H +++
  ORUFI09G05390.1 291 YACRRCGKRFAVRGDWRTHEKNC 313
                      89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.09E-5195221No hitNo description
Gene3DG3DSA:3.30.160.604.5E-5200219IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.64200222IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.055200227IPR007087Zinc finger, C2H2
PROSITE patternPS000280202222IPR007087Zinc finger, C2H2
SMARTSM00355230254286IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-6277311IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.08E-6277311No hitNo description
PROSITE profilePS501578.704291311IPR007087Zinc finger, C2H2
SMARTSM0035558291311IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MHSSSRYRAM HPHLYQSHHH HQHVAPPTKH GGGGAGAGGE EDDQSMLLLS LWPPGHSSHH  60
HQHHHHGAAS SSACSSASIS AAAVAAAHSG GGGGGHGAAA AASSWFNPSH YHGGVGGGGG  120
FLFQEQQEPN VSISLSIAPP CGVSGGNAAA MAAAGSFATS PLPQQPVASS AVATAAGGGQ  180
APSQYWIPSA AEILVGSTQF SCAVCNKTFN RFNNMQMHMW GHGSQYRKGS ESLRGAITVG  240
GAAPPASLMR LPCYCCAEGC RNNVEHPRAR PLKDFRTLQT HYRRKHGARP YACRRCGKRF  300
AVRGDWRTHE KNCGKLWFCV CGSDFKHKRS LKDHVRSFGG GHAPHIVESY STGAGGGGGC  360
GGAGADDDDD EYYDDDDDTV SLSRATSAHD DADMIVV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0062350.0AP006235.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0017N10.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876264.10.0zinc finger protein WIP6
TrEMBLA0A0E0QPH10.0A0A0E0QPH1_ORYRU; Uncharacterized protein
STRINGORUFI09G05390.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113063241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-95C2H2-like zinc finger protein