PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI09G05290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 250aa MW: 25676.3 Da PI: 6.7864 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.8 | 1.8e-08 | 37 | 61 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 k +lC+ +++ G C+ G C++aHg+ ORUFI09G05290.1 37 KSVLCMKWRE-GRCHNGVACRYAHGE 61 678*******.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 8.32E-7 | 33 | 66 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-9 | 35 | 66 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0011 | 35 | 61 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.206 | 35 | 62 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.3E-6 | 37 | 61 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MDSAAAERPS SYAVNFPPLL PAPAPTVAGA MGVANHKSVL CMKWREGRCH NGVACRYAHG 60 EEDQRIVPEM RVGGGGTSMH ARSSPPRDGA SSGSTASIAM AACRIEEQRH GRGGSPSSYH 120 ARGGNALGSG SARSTAPTPP RAHTTPHCSR SVAAPRASTS PLRPSPVPPP ATLHSAADVQ 180 RSVARALEDF EQRESSSSVF PLAIDIVAED AMTATSEPSA TSDDDAITTT SSSSTTDADE 240 LDAAVAAPPK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005912 | 0.0 | AP005912.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0064I23. | |||
GenBank | AP014965 | 0.0 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015611102.1 | 1e-137 | putative zinc finger CCCH domain-containing protein 58 | ||||
Swissprot | Q69KP0 | 1e-138 | C3H58_ORYSJ; Putative zinc finger CCCH domain-containing protein 58 | ||||
TrEMBL | A0A0E0QPG1 | 1e-177 | A0A0E0QPG1_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI09G05290.1 | 1e-178 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP31544 | 4 | 4 |