PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI09G04860.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 495aa    MW: 52168.8 Da    PI: 6.6384
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI09G04860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM67.73.4e-21171528125
              NAM   8 hPtdeelvveyLkkkvegkklelee.........vikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratk..sgyWka 85 
                      hPt++el++ yL++++  ++++ +          +i+++d y ++P dL +     +++ +++ wyfFs+ ++++++g+r+ ra++  +g W++
  ORUFI09G04860.1  17 HPTEQELISSYLHPRLLLTTTKPAAavaaggvpsFIHHADAYAADPADLTArhlpaRAADGSRAWYFFSPVRTTTERGTRRARAVEsgDGCWHS 110
                      9**************88877333234566777768**************84466666666888********************87744788*** PP

              NAM  86 tgkdkevlskkgelvglkktLvfykgrapkge..ktdWvmhe 125
                          ++v+++ g+ vg ++ + f k+r+++g+  +t W+m e
  ORUFI09G04860.1 111 ESGVRAVVDAAGRRVGHRQFFSFVKKREEDGKrvRTGWLMVE 152
                      ************************99999887558*****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100528.56310176IPR003441NAC domain
PfamPF023656.8E-1217152IPR003441NAC domain
SuperFamilySSF1019411.44E-3017176IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MADADADACP AVFASRHPTE QELISSYLHP RLLLTTTKPA AAVAAGGVPS FIHHADAYAA  60
DPADLTARHL PARAADGSRA WYFFSPVRTT TERGTRRARA VESGDGCWHS ESGVRAVVDA  120
AGRRVGHRQF FSFVKKREED GKRVRTGWLM VELGVDNDAA SASSSNELVL CKIYMTPRMP  180
PPSPPSAVTS SAAATMELMP RAPPPSAPSA VTSPAATTME LMAGGVHKRR KISDEIAAAA  240
TPPHPQQQRR QRCVPDNDGS KESSGESSSV VILDDDDDDA DAPEDGGAVR SKLRSDDGVM  300
LADARDDEQH AATSDSMAGT SGGAVTGGGH GKLLPDLNVV ATVAHDDEGR HARGAPRPQD  360
GGTSTTTTMV ASAGAERGST TGHLPAATAG YRRTLMLFLE EEDDDAVEDE QQQQQAPPLP  420
PATSTATTTT RTAAEANVQR QRQPPCCTFV VHPCAVHAKM RHGAAYGCGC RVTGAVRRGG  480
YHLPRRAVHT TTTGQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0058390.0AP005839.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0044K01.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611524.10.0PH domain leucine-rich repeat protein phosphatase 1
TrEMBLA0A0E0QPB70.0A0A0E0QPB7_ORYRU; Uncharacterized protein
TrEMBLQ69LG10.0Q69LG1_ORYSJ; Os09g0295000 protein
STRINGORUFI09G04860.10.0(Oryza rufipogon)
STRINGOS09T0295000-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1745799