PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI08G26490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 231aa MW: 24993.8 Da PI: 5.3989 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.5 | 1.6e-18 | 53 | 103 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + ++GVr++ +g+WvAeIr+p + r +r +lg+f ta +Aa+a++ a+++l+g ORUFI08G26490.1 53 CPFRGVRQRT-WGKWVAEIREP---N-RgARLWLGTFNTALDAARAYDSAARALYG 103 679****999.**********8...3.35***********************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 20.297 | 54 | 111 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.5E-29 | 54 | 117 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-9 | 55 | 66 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-19 | 55 | 110 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 8.65E-28 | 55 | 109 | No hit | No description |
Pfam | PF00847 | 5.1E-12 | 55 | 103 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.9E-29 | 55 | 110 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-9 | 77 | 93 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MEMDIGEGES CCGRRKQQQQ QNISSSKSRK CCPLRRSRKG CMKGKGGPEN QRCPFRGVRQ 60 RTWGKWVAEI REPNRGARLW LGTFNTALDA ARAYDSAARA LYGDCARLNL LLAAATAGAP 120 PAAAATPSVA TPCSTNDDSN NSSSTTHQQQ LTTMLQLDDD NYTLQPSSSD QEDFETYVTR 180 LPKAEDFGLE GFQEVPLDVL DEAGGGISIW DLSICPADFM AAAATTTAKS S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 6e-15 | 55 | 112 | 3 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00519 | DAP | Transfer from AT5G18450 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012616 | 0.0 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015651102.1 | 1e-145 | dehydration-responsive element-binding protein 2C | ||||
Swissprot | Q84ZA1 | 1e-145 | DRE2C_ORYSJ; Dehydration-responsive element-binding protein 2C | ||||
TrEMBL | A0A0E0IGD1 | 1e-170 | A0A0E0IGD1_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0QMI6 | 1e-170 | A0A0E0QMI6_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2YY88 | 1e-170 | A2YY88_ORYSI; Uncharacterized protein | ||||
STRING | ORUFI08G26490.1 | 1e-171 | (Oryza rufipogon) | ||||
STRING | ONIVA09G01190.1 | 1e-171 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5510 | 34 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18450.1 | 8e-28 | ERF family protein |
Publications ? help Back to Top | |||
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