PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI08G24960.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | AP2 | ||||||||
Protein Properties | Length: 482aa MW: 50585.1 Da PI: 4.6341 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.5 | 1.2e-16 | 55 | 107 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 + ++GVr++ + grWv+e+r+p g + r +lg+f+ a+ Aa+a++aa+++l+g ORUFI08G24960.1 55 PVFRGVRRRGRAGRWVCEVRVP---GrRGCRLWLGTFDAADAAARAHDAAMLALRG 107 579******************9...6445*************************98 PP | |||||||
2 | AP2 | 58.4 | 1.8e-18 | 290 | 342 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 + ++GVr++ + grWv+e+r+p g + r ++g+f+tae+Aa+a++aa+++l g ORUFI08G24960.1 290 PVFRGVRRRGRAGRWVCEVRVP---GsRGDRLWVGTFDTAEDAARAHDAAMLALCG 342 579******************9...5445***********************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.8E-12 | 55 | 107 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-16 | 56 | 122 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.167 | 56 | 116 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-15 | 56 | 117 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.1E-25 | 56 | 118 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.2E-13 | 290 | 342 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.7E-21 | 291 | 356 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-27 | 291 | 352 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-18 | 291 | 352 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 20.284 | 291 | 350 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.03E-18 | 304 | 352 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 482 aa Download sequence Send to blast |
MCTRKLEEIT GEWPPPALQA ASTTSSSSEP CRRLSPPTSS KRPAGRTKFH ETRHPVFRGV 60 RRRGRAGRWV CEVRVPGRRG CRLWLGTFDA ADAAARAHDA AMLALRGRAA ACLNFADSAW 120 LLAVPPPATL RCAADVQRAV ARALEDFEQR ESSSSVFPLA IDVVAEDAMS ATSEPSTASD 180 DDAVTSSSSS MTDADEEAEA SPFELDVVSD MGWSLYYASL AEGLLMEPPA SGASSDDDDD 240 AIVDSGDIAD NTTAMGQLMS SSATTAATAT GPASPKRPAG RTKFQETRHP VFRGVRRRGR 300 AGRWVCEVRV PGSRGDRLWV GTFDTAEDAA RAHDAAMLAL CGASASLNFA DSAWLLHVPA 360 ASGHDQLPDV QRAASEAVAE FQRRGTAATA TATSGDAAST APPSPPVLPS NDDNASSVST 420 PAAAAALDNG MLHGDMFGGM RADLYYASLA QGLLIEPPPP PTTAEGFCDD EGCGGAEMEL 480 WS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004163 | 0.0 | AP004163.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1323_A06. | |||
GenBank | AP004632 | 0.0 | AP004632.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0623F08. | |||
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648963.1 | 1e-125 | dehydration-responsive element-binding protein 1I | ||||
Swissprot | Q0J3Y6 | 1e-127 | DRE1I_ORYSJ; Dehydration-responsive element-binding protein 1I | ||||
TrEMBL | A0A0E0QLZ4 | 0.0 | A0A0E0QLZ4_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI08G24960.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25470.1 | 6e-20 | C-repeat/DRE binding factor 2 |