PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI08G24040.5
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 176aa    MW: 19857.8 Da    PI: 8.9469
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI08G24040.5genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.41.2e-30959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fs+ g+lye++s
  ORUFI08G24040.5  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALLVFSPAGRLYEFAS 59
                     79***********************************************86 PP
2K-box17.41.9e-071211634385
            K-box  43 LesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 
                      +++L++ eL+ Le+++ ++l+ +++k +  + + + ++ kk k
  ORUFI08G24040.5 121 VNELNIAELRGLEEAMTNALTVVKNKLMMQVASVLPQSEKKRK 163
                      799********************99988888877777777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.039161IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.63E-31279IPR002100Transcription factor, MADS-box
CDDcd002653.34E-38271No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-32323IPR002100Transcription factor, MADS-box
PfamPF003196.7E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-323859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALLVFSP AGRLYEFASS  60
TSSIDTIFGR YWDLLDTTID LNIEARESRV DCNIQLRQKE RSDDPVPKIN HITQCVLESN  120
VNELNIAELR GLEEAMTNAL TVVKNKLMMQ VASVLPQSEK KRKSCSISEP RSGVSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-20194184Myocyte-specific enhancer factor 2B
1tqe_Q1e-20194184Myocyte-specific enhancer factor 2B
1tqe_R1e-20194184Myocyte-specific enhancer factor 2B
1tqe_S1e-20194184Myocyte-specific enhancer factor 2B
6c9l_A1e-20194184Myocyte-specific enhancer factor 2B
6c9l_B1e-20194184Myocyte-specific enhancer factor 2B
6c9l_C1e-20194184Myocyte-specific enhancer factor 2B
6c9l_D1e-20194184Myocyte-specific enhancer factor 2B
6c9l_E1e-20194184Myocyte-specific enhancer factor 2B
6c9l_F1e-20194184Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts redundantly with EJ2 to control meristem maturation and inflorescence architecture. {ECO:0000269|PubMed:28528644}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2429800.0AK242980.1 Oryza sativa Japonica Group cDNA, clone: J090094F15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649438.11e-115MADS-box transcription factor 51-like isoform X2
SwissprotK4DEK06e-36J2_SOLLC; MADS-box protein J2
TrEMBLA0A0E0QLM31e-126A0A0E0QLM3_ORYRU; Uncharacterized protein
STRINGOS08T0531900-011e-115(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.35e-39MIKC_MADS family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Soyk S, et al.
    Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene.
    Cell, 2017. 169(6): p. 1142-1155.e12
    [PMID:28528644]