PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI08G23530.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 396aa MW: 41340.8 Da PI: 5.2898

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI08G23530.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.2	3.5e-09	205	252	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L++l+P + +k Ka +L + ++Y++sLq ORUFI08G23530.1 205 SHSLAERVRRERISQRMKVLQDLVPGC----NKVIGKALMLDEIINYVQSLQ 252 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.22E-16	199	266	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.67E-10	199	256	No hit	No description
PROSITE profile	PS50888	15.301	201	251	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.6E-16	201	264	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-6	205	252	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.0E-10	207	257	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MDGGRVGGDY ISSLLSSSPR LDFGVPVLDA VVAPGGGGGG GDCGLDKLCG DPGFAERAAR 60 LSSFNNGGGG VGQRYGGAGA GLFGMPPPAP GDFAGGGSRE ASSVSDPASS AMKDAAATAA 120 AAAKGKGKEP PVGEEKESDG KRCKTGNGEK ESSVKPKAEQ AGSDSSVEDG GGGGQKQGKG 180 KNAKPVEPPK DYVHVRARRG QATDSHSLAE RVRRERISQR MKVLQDLVPG CNKVIGKALM 240 LDEIINYVQS LQRQVEFLSM KLATVNPLDF SNLPTLLQKD MFQACGPSAS SVFSLESSNS 300 AFPFAEQGDV FQQFAQNSME SQCTLNQLDL ALSQATNAAQ YAFQDGTAGA NLQQRNFWED 360 DLQSVFHIEN GQSQENGVSA PNFHGQLQAG HMKMEF

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MDGGRVGGDY ISSLLSSSPR LDFGVPVLDA VVAPGGGGGG GDCGLDKLCG DPGFAERAAR  60
LSSFNNGGGG VGQRYGGAGA GLFGMPPPAP GDFAGGGSRE ASSVSDPASS AMKDAAATAA  120
AAAKGKGKEP PVGEEKESDG KRCKTGNGEK ESSVKPKAEQ AGSDSSVEDG GGGGQKQGKG  180
KNAKPVEPPK DYVHVRARRG QATDSHSLAE RVRRERISQR MKVLQDLVPG CNKVIGKALM  240
LDEIINYVQS LQRQVEFLSM KLATVNPLDF SNLPTLLQKD MFQACGPSAS SVFSLESSNS  300
AFPFAEQGDV FQQFAQNSME SQCTLNQLDL ALSQATNAAQ YAFQDGTAGA NLQQRNFWED  360
DLQSVFHIEN GQSQENGVSA PNFHGQLQAG HMKMEF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK099291	0.0	AK099291.1 Oryza sativa Japonica Group cDNA clone:J023127C06, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015648582.1	0.0	transcription factor BHLH094-like
TrEMBL	A0A0E0QLF0	0.0	A0A0E0QLF0_ORYRU; Uncharacterized protein
STRING	ORUFI08G23530.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP919	38	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	2e-53	bHLH family protein