PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI08G23260.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 1083aa    MW: 120149 Da    PI: 6.7077
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI08G23260.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.32.5e-2299200199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++
  ORUFI08G23260.3  99 FCKTLTASDTSTHGGFSVPRRAAERIfprldfsM-QPPA-QELQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFI--RD 188
                      99*****************************954.4444.49************************************************..45 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                       +++l+++++r+
  ORUFI08G23260.3 189 AKQQLLLGIRRA 200
                      677789999997 PP

2Auxin_resp117.31.3e-38225308183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaa+++s F+++YnPrastseFv++++k++ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+ S+Wr+++
  ORUFI08G23260.3 225 AAHAAANNSQFTIYYNPRASTSEFVIPFAKYQKAVYgNQLSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKTSHWRNIQ 308
                      79**********************************9********************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.71E-4289228IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.0E-4092214IPR015300DNA-binding pseudobarrel domain
CDDcd100171.48E-1898188No hitNo description
PROSITE profilePS5086311.64699201IPR003340B3 DNA binding domain
SMARTSM010191.5E-2099201IPR003340B3 DNA binding domain
PfamPF023621.7E-2099200IPR003340B3 DNA binding domain
PfamPF065074.9E-33225308IPR010525Auxin response factor
PfamPF023094.4E-109551050IPR033389AUX/IAA domain
PROSITE profilePS5174526.7759651049IPR000270PB1 domain
SuperFamilySSF542774.41E-79771044No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1083 aa     Download sequence    Send to blast
MASSGGGGGG GEEGEGRGAT KVNQELWYAC AGPLVSLPPQ GSLIVYFPQG HSEQADPDTD  60
EVYARMTLQP VSNVTQCDKE TLLASELALK QTRPQTEFFC KTLTASDTST HGGFSVPRRA  120
AERIFPRLDF SMQPPAQELQ ARDLHDNVWT FRHIYRGQPK RHLLTTGWSL FVSGKRLLAG  180
DSVLFIRDAK QQLLLGIRRA NRQPTNLSSS VLSSDSMHIG ILAAAAHAAA NNSQFTIYYN  240
PRASTSEFVI PFAKYQKAVY GNQLSLGMRF RMMFETEESG TRRYMGTITG ISDLDPVRWK  300
TSHWRNIQVA WDEAAPTERR TRVSLWEIEP IIAPFFIYPS PLFTAKRPRL PGMTDDETEM  360
DGLLKRAMPW VGEEICKKDL NIQNSVVPGL NLAQWMNMQH SSSLPGTVVQ PELLNSLSGK  420
PVQNLAAADL SRQISFHPQF LQQNNIQFNT ALVPQQNQQT EQLAKVIPTP NQLGSVIIPQ  480
KVVQDCNSEQ RQHVVTQPVQ GSQPNINIPQ PQLVVQAQLQ QPQVILQAQL QQPQVVVQAQ  540
LQQTQPSVQS HTVLQGGLQQ IQLLQQQQPH VQHQQIPQQL HHHQQQTQQL QPVQQVQQSV  600
QEHQQIKIQP VHVSMDASMN TQVADHQMKL QLLKALQPQQ PLISEQQKML LDLQQQVINS  660
QSAPQQCVQV TNQAISLHNS NTIQYPTQQK VQSHQVQDLT GNVIPNSKSD IATSMGASSL  720
HVAGGHQLLK TDDVPSTSTS PSTNSNPVLL QSIPSSSKNQ SLTTAGKTSQ SSVVLGPTIE  780
QDTKPYQNVK QTVMIPKTTE HRPATGQDCI NNNPQMDYLD TSSSATSVCL SQADGSLQQN  840
FPPSSFHQHH LLKDTVPDSE FEVTDPRNNL LFGVNIDGQL GLPLNADLLA NDIGTDKYMD  900
QLPGNGISNF ISSKDSQQEL SSSMISHSFG VADMAFNSID SAINDTPFLN RNSRSAAGPA  960
HQRMRTYTKV HKRGAVGRSI DINRYSGYDE LKHDVARMFG IEGQLGDQNR VGWKLVYEDH  1020
EKDVLLVGDD PWEDFVKCVR CIRILSPQEE MQMRLVGDFG DSFLPNQACS SSDGGHPWRI  1080
TGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1392232951388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0712970.0AB071297.1 Oryza sativa OsARF7b mRNA for auxin response factor 7b, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649755.10.0auxin response factor 21
SwissprotQ6YZW00.0ARFU_ORYSJ; Auxin response factor 21
TrEMBLA0A0E0QLB90.0A0A0E0QLB9_ORYRU; Auxin response factor
STRINGONIVA08G23730.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]