PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI08G23260.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

ARF

Protein Properties

Length: 1148aa MW: 126828 Da PI: 7.0207

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI08G23260.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	70.2	2.7e-22	132	233	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae++ + +++ ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++ ORUFI08G23260.1 132 FCKTLTASDTSTHGGFSVPRRAAERIfprldfsM-QPPA-QELQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFI--RD 221 99***************************954.4444.49**********************************************..45 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +++l+++++r+ ORUFI08G23260.1 222 AKQQLLLGIRRA 233 677789999997 PP
2	Auxin_resp	117.2	1.4e-38	258	341	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s F+++YnPrastseFv++++k++ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+ S+Wr+++ ORUFI08G23260.1 258 AAHAAANNSQFTIYYNPRASTSEFVIPFAKYQKAVYgNQLSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKTSHWRNIQ 341 79********************************9******************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	5.1E-42	122	261	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	9.7E-40	125	247	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.61E-18	131	221	No hit	No description
SMART	SM01019	1.5E-20	132	234	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.646	132	234	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.8E-20	132	233	IPR003340	B3 DNA binding domain
Pfam	PF06507	5.3E-33	258	341	IPR010525	Auxin response factor
Pfam	PF02309	4.6E-10	988	1083	IPR033389	AUX/IAA domain
PROSITE profile	PS51745	26.775	998	1082	IPR000270	PB1 domain
SuperFamily	SSF54277	4.71E-7	1010	1077	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009734	Biological Process	auxin-activated signaling pathway
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1148 aa Download sequence Send to blast
MASSGGGGGG GEEGEGRGAT KVNQELWYAC AGPLVSLPPQ GSLIVYFPQG HSEQVAASMR 60 KDADAQIPSY PNLPSKLICI LHSVTMLADP DTDEVYARMT LQPVSNVTQC DKETLLASEL 120 ALKQTRPQTE FFCKTLTASD TSTHGGFSVP RRAAERIFPR LDFSMQPPAQ ELQARDLHDN 180 VWTFRHIYRG QPKRHLLTTG WSLFVSGKRL LAGDSVLFIR DAKQQLLLGI RRANRQPTNL 240 SSSVLSSDSM HIGILAAAAH AAANNSQFTI YYNPRASTSE FVIPFAKYQK AVYGNQLSLG 300 MRFRMMFETE ESGTRRYMGT ITGISDLDPV RWKTSHWRNI QVAWDEAAPT ERRTRVSLWE 360 IEPIIAPFFI YPSPLFTAKR PRLPGMTDDE TEMDGLLKRA MPWVGEEICK KDLNIQNSVV 420 PGLNLAQWMN MQHSSSLPGT VVQPELLNSL SGKPVQNLAA ADLSRQISFH PQFLQQNNIQ 480 FNTALVPQQN QQTEQLAKVI PTPNQLGSVI IPQKVVQDCN SEQRQHVVTQ PVQGSQPNIN 540 IPQPQLVVQA QLQQPQVILQ AQLQQPQVVV QAQLQQTQPS VQSHTVLQGG LQQIQLLQQQ 600 QPHVQHQQIP QQLHHHQQQT QQLQPVQQVQ QSVQEHQQIK IQPVHVSMDA SMNTQVADHQ 660 MKLQLLKALQ PQQPLISEQQ KMLLDLQQQV INSQSAPQQC VQVTNQAISL HNSNTIQYPT 720 QQKVQSHQVQ DLTGNVIPNS KSDIATSMGA SSLHVAGGHQ LLKTDDVPST STSPSTNSNP 780 VLLQSIPSSS KNQSLTTAGK TSQSSVVLGP TIEQDTKPYQ NVKQTVMIPK TTEHRPATGQ 840 DCINNNPQMD YLDTSSSATS VCLSQADGSL QQNFPPSSFH QHHLLKDTVP DSEFEVTDPR 900 NNLLFGVNID GQLGLPLNAD LLANDIGTDK YMDQLPGNGI SNFISSKDSQ QELSSSMISH 960 SFGVADMAFN SIDSAINDTP FLNRNSRSAA GPAHQRMRTY TKVHKRGAVG RSIDINRYSG 1020 YDELKHDVAR MFGIEGQLGD QNRVGWKLVY EDHEKDVLLV GDDPWEDFVK CVRCIRILSP 1080 QEEMQMRLVG DFGDSFLPNQ ACSSSDGAHS SRRFFVAAGA GAAASPVDSL AGGGWTGRNL 1140 RSTLSPRH

Sequence ? help Back to Top

Protein Sequence Length: 1148 aa Download sequence Send to blast

MASSGGGGGG GEEGEGRGAT KVNQELWYAC AGPLVSLPPQ GSLIVYFPQG HSEQVAASMR  60
KDADAQIPSY PNLPSKLICI LHSVTMLADP DTDEVYARMT LQPVSNVTQC DKETLLASEL  120
ALKQTRPQTE FFCKTLTASD TSTHGGFSVP RRAAERIFPR LDFSMQPPAQ ELQARDLHDN  180
VWTFRHIYRG QPKRHLLTTG WSLFVSGKRL LAGDSVLFIR DAKQQLLLGI RRANRQPTNL  240
SSSVLSSDSM HIGILAAAAH AAANNSQFTI YYNPRASTSE FVIPFAKYQK AVYGNQLSLG  300
MRFRMMFETE ESGTRRYMGT ITGISDLDPV RWKTSHWRNI QVAWDEAAPT ERRTRVSLWE  360
IEPIIAPFFI YPSPLFTAKR PRLPGMTDDE TEMDGLLKRA MPWVGEEICK KDLNIQNSVV  420
PGLNLAQWMN MQHSSSLPGT VVQPELLNSL SGKPVQNLAA ADLSRQISFH PQFLQQNNIQ  480
FNTALVPQQN QQTEQLAKVI PTPNQLGSVI IPQKVVQDCN SEQRQHVVTQ PVQGSQPNIN  540
IPQPQLVVQA QLQQPQVILQ AQLQQPQVVV QAQLQQTQPS VQSHTVLQGG LQQIQLLQQQ  600
QPHVQHQQIP QQLHHHQQQT QQLQPVQQVQ QSVQEHQQIK IQPVHVSMDA SMNTQVADHQ  660
MKLQLLKALQ PQQPLISEQQ KMLLDLQQQV INSQSAPQQC VQVTNQAISL HNSNTIQYPT  720
QQKVQSHQVQ DLTGNVIPNS KSDIATSMGA SSLHVAGGHQ LLKTDDVPST STSPSTNSNP  780
VLLQSIPSSS KNQSLTTAGK TSQSSVVLGP TIEQDTKPYQ NVKQTVMIPK TTEHRPATGQ  840
DCINNNPQMD YLDTSSSATS VCLSQADGSL QQNFPPSSFH QHHLLKDTVP DSEFEVTDPR  900
NNLLFGVNID GQLGLPLNAD LLANDIGTDK YMDQLPGNGI SNFISSKDSQ QELSSSMISH  960
SFGVADMAFN SIDSAINDTP FLNRNSRSAA GPAHQRMRTY TKVHKRGAVG RSIDINRYSG  1020
YDELKHDVAR MFGIEGQLGD QNRVGWKLVY EDHEKDVLLV GDDPWEDFVK CVRCIRILSP  1080
QEEMQMRLVG DFGDSFLPNQ ACSSSDGAHS SRRFFVAAGA GAAASPVDSL AGGGWTGRNL  1140
RSTLSPRH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ldu_A	1e-160	22	362	51	388	Auxin response factor 5
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin under dark condition. Down-regulated by auxin under light condition. {ECO:0000269\|PubMed:17408882}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB071297	0.0	AB071297.1 Oryza sativa OsARF7b mRNA for auxin response factor 7b, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015649755.1	0.0	auxin response factor 21
Swissprot	Q6YZW0	0.0	ARFU_ORYSJ; Auxin response factor 21
TrEMBL	A0A0E0QLB7	0.0	A0A0E0QLB7_ORYRU; Auxin response factor
STRING	ORUFI08G23260.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1409	35	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	auxin response factor 19

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]