PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI08G22960.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 172aa    MW: 19086.6 Da    PI: 4.9733
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI08G22960.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.16e-38201191100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaC++lrr+Ca+dCvlap fpa++p+++a+vh++FGasnv +ll++lp  er +a++++++eA +r++dPvyG++g+i++lq++++ ++ el
  ORUFI08G22960.1  20 RCAACRYLRRRCADDCVLAPFFPASRPHRYACVHRVFGASNVARLLQSLPMAERGNAANTMAMEAYWRVQDPVYGCTGIINRLQEEIRAVQCEL 113
                      6********************************************************************************************* PP

           DUF260  95 allkee 100
                      a+++++
  ORUFI08G22960.1 114 ARTQAH 119
                      *99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.19819120IPR004883Lateral organ boundaries, LOB
PfamPF031958.4E-3820117IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MQDPEEEDDD QQQQHPAARR CAACRYLRRR CADDCVLAPF FPASRPHRYA CVHRVFGASN  60
VARLLQSLPM AERGNAANTM AMEAYWRVQD PVYGCTGIIN RLQEEIRAVQ CELARTQAHL  120
AIAVASSQQP PPPPPPPPLP SPPPPPPPQQ QEEQSPPPLL DPADEFLNLD GL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-292112012111LOB family transfactor Ramosa2.1
5ly0_B2e-292112012111LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1070780.0AK107078.1 Oryza sativa Japonica Group cDNA clone:002-121-F06, full insert sequence.
GenBankAP0047080.0AP004708.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0700D12.
GenBankAP0047610.0AP004761.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0686C03.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660281.15e-67PREDICTED: LOB domain-containing protein 24-like
SwissprotP594688e-39LBD24_ARATH; LOB domain-containing protein 24
TrEMBLB9G1S71e-119B9G1S7_ORYSJ; Uncharacterized protein
STRINGORUFI08G22960.11e-120(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52823562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.13e-32LOB domain-containing protein 24