PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI08G22010.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 507aa MW: 52920.9 Da PI: 7.6046

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI08G22010.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.6	4.8e-05	371	390	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ ORUFI08G22010.1 371 FSCPVCFKTFNRYNNMQMHM 390 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	8.8E-6	371	390	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	9.494	371	398	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	373	393	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence Send to blast
MRGCACAYDV VGSTAYVAFP GSAAAPRPDR APRRPRRVPV EGAADAPRPE ADYAAAVACS 60 PQAGAGQGRR AARTVQVQVQ LAKNRSKSSK QARAAAEAAV ETVEEAAAAA AVEISLRSEV 120 KQPSFLMEDP YTSFFKNPYY YYCTSASSFP TAPAAAAAAA HLPPPLPPPY AALYPTAGGV 180 GVGVGAHHHH QYPPAAFFHP PPVHQQHQAP PSPPLREALP LLSLSPTPAR RGGVDQEGAA 240 AGSTATPAAA AARAPLFADL NCIPTCCGDD NDGGDPMDVE VAGTTADIDA AVALRIGLPA 300 GGTEADLLSG LTGAGVEHEE EEEDCKVDGG GSGGDDEVVP LGFSSTPIGK LNKGQYWIPT 360 PSQILIGPTQ FSCPVCFKTF NRYNNMQMHM WGHGTGRGRS RCAGCSRRRC CGCRATAARR 420 GAGTTSTTRG RXKGDWRTHE KNCGKLWYCL CGSEFKHKRS LKDHARAFGH AHTALDADDD 480 DGAVSDADAV VRPSSSMAAS SLQPPPR

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence Send to blast

MRGCACAYDV VGSTAYVAFP GSAAAPRPDR APRRPRRVPV EGAADAPRPE ADYAAAVACS  60
PQAGAGQGRR AARTVQVQVQ LAKNRSKSSK QARAAAEAAV ETVEEAAAAA AVEISLRSEV  120
KQPSFLMEDP YTSFFKNPYY YYCTSASSFP TAPAAAAAAA HLPPPLPPPY AALYPTAGGV  180
GVGVGAHHHH QYPPAAFFHP PPVHQQHQAP PSPPLREALP LLSLSPTPAR RGGVDQEGAA  240
AGSTATPAAA AARAPLFADL NCIPTCCGDD NDGGDPMDVE VAGTTADIDA AVALRIGLPA  300
GGTEADLLSG LTGAGVEHEE EEEDCKVDGG GSGGDDEVVP LGFSSTPIGK LNKGQYWIPT  360
PSQILIGPTQ FSCPVCFKTF NRYNNMQMHM WGHGTGRGRS RCAGCSRRRC CGCRATAARR  420
GAGTTSTTRG RXKGDWRTHE KNCGKLWYCL CGSEFKHKRS LKDHARAFGH AHTALDADDD  480
DGAVSDADAV VRPSSSMAAS SLQPPPR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK287566	0.0	AK287566.1 Oryza sativa Japonica Group cDNA, clone: J065027L04, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015649538.1	1e-150	zinc finger protein WIP2
TrEMBL	A0A0E0QKW3	0.0	A0A0E0QKW3_ORYRU; Uncharacterized protein
STRING	ORUFI08G22010.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP586	38	170

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-25	C2H2 family protein