PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI08G21160.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 603aa    MW: 68509.8 Da    PI: 5.8857
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI08G21160.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.21.1e-06517543127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +kt+ C+++ rtG+C+ Gd C +aH++
  ORUFI08G21160.1 517 PKTVMCPDWCRTGHCSSGDGCEYAHSQ 543
                      79***********************97 PP
2zf-CCCH24.54.8e-08555577123
                      --S---SGGGGTS--TTTTT-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkF 23 
                      y+te+Cr+++++  C+yGd+C++
  ORUFI08G21160.1 555 YRTEPCRYWLAGKGCWYGDKCRY 577
                      89*********99*********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.91E-8516548IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.873516544IPR000571Zinc finger, CCCH-type
SMARTSM003560.011516543IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-11518547IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5553579IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-6553577IPR000571Zinc finger, CCCH-type
SMARTSM003560.0018554582IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.094554583IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-5555577IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MKQEEDELAV DPGVGAVCDP VTKLRFEAIV CLLDRIPITL QQIDMFGQDV AFRTKRIGNI  60
EALLDFLKGS AAATWGARAG AGEPIDASSP ELHRLVEDAE TAYRDVRGLQ PRMVVQMPRV  120
FHKVCLPKLH QLLVIARRLL AQNVALRRLL LQPVGCDVSP MALAEAAVSS DDFERHGRNK  180
VVIDEFGYED LLRRRHTGHE SQNDADDAEQ HGREVREGEY EDLILMRHRD TSHELLQDDA  240
RRRRADAEAE QQGGDGEVRD EYEDYLCRQL GAVYSGPDQI YEHDMRGPEP AHSPNTPDQI  300
YVPCERMLPY PSNCDNAEDR IHMACLALKN LVKDMEGIYS PRGTLWQYLE DVISLAHALF  360
LENTKLHRFT DQASHQDLPL QPPQGFPFQQ QPQHDGYQQP GVPFQQPQQG GYYGHGQGIM  420
FQRGGYLQDV PFQHWQWQQG GYGQGFMFPQ AQHQGGYGQG FLSEQPLPGD PSFMNMQAPY  480
DGDGGVLFQK PQHYHHGHVP SEKGAIQAKG KQKMREPKTV MCPDWCRTGH CSSGDGCEYA  540
HSQDELRVID ARPKYRTEPC RYWLAGKGCW YGDKCRYKQH RLAREPLYVD PFLTGTTYDR  600
FAD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046200.0AP004620.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0605H02.
GenBankAP0047620.0AP004762.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0686H11.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025883283.10.0putative zinc finger CCCH domain-containing protein 57 isoform X2
SwissprotA3BUD20.0C3H57_ORYSJ; Putative zinc finger CCCH domain-containing protein 57
TrEMBLA0A0E0QKK30.0A0A0E0QKK3_ORYRU; Uncharacterized protein
STRINGORUFI08G21160.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2025277
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-13C3H family protein