PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI08G20840.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 1664aa    MW: 181031 Da    PI: 7.5612
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI08G20840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00038356378123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++Cp C+k+F  +s +  Hi +H
  ORUFI08G20840.1 356 FECPVCNKTFEEQSRYFGHIGSH 378
                      89****************99777 PP
2zf-C2H2110.001311461168123
                       EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2    1 ykCpdCgksFsrksnLkrHirtH 23  
                       ++Cp C+k+F  +s +  H  +H
  ORUFI08G20840.1 1146 FECPVCNKTFEEQSRYFGHVGSH 1168
                       89************999987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509829.693181254IPR001739Methyl-CpG DNA binding
SuperFamilySSF541715.56E-6185236IPR016177DNA-binding domain
PfamPF014292.0E-4191234IPR001739Methyl-CpG DNA binding
SMARTSM003550.41307330IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280309330IPR007087Zinc finger, C2H2
PROSITE profilePS501579.681356383IPR007087Zinc finger, C2H2
SMARTSM003550.018356378IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280358378IPR007087Zinc finger, C2H2
PROSITE profilePS509829.6939711044IPR001739Methyl-CpG DNA binding
SuperFamilySSF541715.56E-69751026IPR016177DNA-binding domain
PfamPF014292.1E-49811024IPR001739Methyl-CpG DNA binding
SMARTSM003550.4110971120IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028010991120IPR007087Zinc finger, C2H2
PROSITE profilePS501579.32811461173IPR007087Zinc finger, C2H2
SMARTSM003550.02311461168IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028011481168IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1664 aa     Download sequence    Send to blast
METEVFPVVD LRVLTQSDLD ELAAASAHAV DPRSSCPDRA VFNESAGSRK QTFSRVRFAA  60
AAAASASAAA AAKLPRGNDK EDSFIAYHLR RLFAPDDPSL TENPSFPQTQ TLARSPSPDP  120
DQLTTNSRGV SVDLVSLSRL ADPYDAELGK RTARMTTEEE LMGFISSLAG QWVNQRMRRK  180
LVDASFFGDH LPSGWRLQLG IERKDRKAWV NCFSYVSPKG QSFATCQEVS AYLMSLLGYP  240
EFKTDNIEYG STQQHGLCAD DGVNVLGVQH QIGTSMDSQS NLPVASATFY SHSRDQDETV  300
ADDINSYECQ QCNLTFHGQS AYAHHLITFH KVSSKRRKSN KVSKFGEPVI GKDGKFECPV  360
CNKTFEEQSR YFGHIGSHAK YQGLTPEAFL QTFSGKVGNN SFAGLSSSLQ VLVGSPQLNE  420
KTTACEARSQ HHDCSTKHGG NSTRGIDLFN SNHPANFNGH NQSWCRSDEI PPTTEAQSTW  480
TYRNNEMNCA DRTVPRTVPQ PNDHEDCRVS GFAEATNFND QAGRHQGFRP FSFGTTNHCQ  540
GQIIDHAVAA SKHAEVNNSM KSRDVNLNSR LNTISFPIAT ANNETSTALN DVNRSCITGK  600
GFFLLPKIPQ TSRRTDRLDW RTPKAEGHDG IGELLNLVHT GYLSTLLFKH SHFFSHWISL  660
QDSCTLNVIQ SKQSHVAKNA QPKQRERERE KLSVRVGEIS VRGKERRWRR CSSGSAMPSS  720
SPAGGALALP LPSSVAEGAL GLGRERGGGG SSCFVRETRF VVPTAVVDEA SVEPFVCSGD  780
AHMVLPAPVV ELTKYSQPNL IMNPRSSEPE ASNKETTTIH KVCCRSPPPF ILSPTPMPLP  840
PAIPSSPSPN PTTPPPPHPP GERHGRKLPR GNDKEDSFIA YHLRRLFAPD DPSSPQTQTL  900
ALPAPPSPDP DQLTTNSKGV SVDLVSLSRL ADPYDAELGK RTAGMTTEEE LMGFISSLAG  960
QWVSQRMRRK LVDASFFGDH LPSGWRLQLG IERKDRKAWV NCFSYVSPKG QSFATCQEVS  1020
AYLMSLLGYP EFKTDNIEYG STQQHGLCAD DGVNVLGVQH QIGTGMDSQS ILPVASITFS  1080
SHSRDQDETD ADDINSYECQ QCNLTFHGQS AYAHHLITFH KMGSKRRKIN KVGKFGEPVI  1140
GKDGKFECPV CNKTFEEQSR YFGHVGSHAK YHGLTPEAFL QTLSGKVGND SFAGLSCSLQ  1200
DLVGSPQLNE KTTASEARSQ HHNCSTKHGG NSTRGIDLFN SNCPANFNGH NQTWCRPDEI  1260
PPTTDAPSTW TYRNNVTNCA DRTVPRTAPQ PNDHMDCRVS GFAEATNFND QAGRHQGFRP  1320
SSFGTTNHCQ GQIIDHAVAA SKHAEVNNSM KSRDVNLNSR LNTISFPIAT ANNETSTALN  1380
DVNRSCITGK GFSGSFSNND GAASIVLPSS GLNNKIPSSL GVADRSSIAA RSFNAGYVNE  1440
NGASEANNIG NKNNTMVYQT SLAMRPVSPC DLQLGFSGQK QQILPGYGEL RPAASGSPQL  1500
GGMAANSSIP TRPSQPQFGS MARTDALPTG PSQPGSLARP NFVPTGFSQF ASRPPTSVPP  1560
ADSSQFAGGM ARQNIPTMSE PTLVLGYTPQ MVNGPPAQLG WDLSLSRMVS EGMLPVLCIW  1620
CNSQFHHFGP IDAQQSGSFG FICPACKEKM SGNPNAPNNG PWQP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0690970.0AK069097.1 Oryza sativa Japonica Group cDNA clone:J023004M17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650380.10.0uncharacterized protein LOC4345880 isoform X1
TrEMBLA0A0E0QKG90.0A0A0E0QKG9_ORYRU; Uncharacterized protein
STRINGORUFI08G20840.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26871419