PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI08G20750.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Trihelix | ||||||||
Protein Properties | Length: 315aa MW: 35062.4 Da PI: 7.708 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 63.5 | 4.9e-20 | 29 | 113 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W + e+++L++a++e+++rlrrg+lk+++Weev++ + + ++++ +qC++k+e+l+kry+ + ++ s +pyf+++e ORUFI08G20750.1 29 WAHMETMHLLDAYEERWTRLRRGQLKAQQWEEVAADVaarcaaSGAALRKTGTQCRHKLEKLRKRYRIEGARPVT------SLWPYFRRME 113 *************************************999987777889*****************988776664......68*******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.4E-18 | 27 | 115 | No hit | No description |
SMART | SM00595 | 4.0E-5 | 36 | 120 | IPR006578 | MADF domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MAQEAASAAA GEEGALPQRR RKSAPGQPWA HMETMHLLDA YEERWTRLRR GQLKAQQWEE 60 VAADVAARCA ASGAALRKTG TQCRHKLEKL RKRYRIEGAR PVTSLWPYFR RMERLERGPL 120 PVSSAFPPPP PAASPPAAAS DDDDDDEEDD EEEEEVEEPI PRNNTRSING ILRDSGGGGG 180 GFSGFAPRPP PQQPPPSFAM LSTAPPRKRV PYEAFQAKVA MADKVKEEEP PPVATRPGGG 240 TNEQLSAVLR DFGQGIMRLE RRRMEMQWEI DRGWKETEAR HNRMLLDAQR HLHEALAATP 300 PPLKKARREH GGDGS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 17 | 22 | QRRRKS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005918 | 0.0 | AP005918.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0419H09. | |||
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648379.1 | 0.0 | trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A0E0QKG0 | 0.0 | A0A0E0QKG0_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q6YTS9 | 0.0 | Q6YTS9_ORYSJ; Os08g0484700 protein | ||||
STRING | ORUFI08G20750.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS08T0484700-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10078 | 29 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44730.1 | 6e-19 | Trihelix family protein |