PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI08G19690.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 507aa    MW: 53388.8 Da    PI: 10.2115
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI08G19690.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.46.1e-0696118123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C++C++ F r  nL+ H r+H
  ORUFI08G19690.1  96 YVCEICNQGFQRDQNLQMHRRRH 118
                      9*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.79E-593119No hitNo description
Gene3DG3DSA:3.30.160.602.1E-595118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9796118IPR007087Zinc finger, C2H2
SMARTSM003550.005296118IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MLSSCAPTAV PPQDASGAAT EPFRSLQIAT AGAAAKKKRR PAGTPGKWSS IHTSNYTGYL  60
TSTSVGNGAR RRPAGADPDA EVVSLSPRTL LESDRYVCEI CNQGFQRDQN LQMHRRRHKV  120
PWKLLKREAG EAARKRVFVC PEPTRPHLRL RPRLLQSFIE HQDACNAGRP RAAEASSSPG  180
RGGGVVVGAP AAASSSQQQQ LFAVPASLSR TASSASPSSD LVVSPVAWPA TGGGGPAMVS  240
PRAAAPAPAG GSIAAFHHRF TDPALSPPTP CGGRRGGCHT THSLELQLMP PRTTNTCAGG  300
SLGGTPVATA VGYYASSSPH SPAAALPSRQ PVADAMRLQL SIGFGGARDD GNNNSSSSSG  360
EVSASATRLK EAAHEQLRLA MAEKAAADEA RAQAKRQAEL ADQELATARR MRYQAQVELS  420
RAHVLRDHAI RQVDATQLQI TCYSCSHKFR ARAAAMISSD VASYVSSVVT EGGDAEVDND  480
GNLHRRRLNA DDGMPRGHSR TMAMDLN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13539KKKRR
23540KKKRRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1067960.0AK106796.1 Oryza sativa Japonica Group cDNA clone:002-116-B04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649378.10.0protein SHOOT GRAVITROPISM 5
TrEMBLA0A0E0QK380.0A0A0E0QK38_ORYRU; Uncharacterized protein
STRINGORUFI08G19690.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105138124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.12e-32indeterminate(ID)-domain 14