PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI08G19510.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 351aa    MW: 36673.1 Da    PI: 7.8602
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI08G19510.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.54.6e-18170224256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  ORUFI08G19510.1 170 RKKLRLSKEQSAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTK 224
                      788899***********************************************98 PP
2HD-ZIP_I/II128.43e-41170260192
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      +kk+rlskeq+++LEesF+e+++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
  ORUFI08G19510.1 170 RKKLRLSKEQSAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELAELR-ALK 260
                      69*************************************************************************************9.665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-18154224IPR009057Homeodomain-like
SuperFamilySSF466892.01E-18157227IPR009057Homeodomain-like
PROSITE profilePS5007117.167166226IPR001356Homeobox domain
SMARTSM003896.3E-16168230IPR001356Homeobox domain
CDDcd000862.06E-17170227No hitNo description
PfamPF000461.7E-15170224IPR001356Homeobox domain
PROSITE patternPS000270201224IPR017970Homeobox, conserved site
PfamPF021831.0E-10226260IPR003106Leucine zipper, homeobox-associated
SMARTSM003403.5E-25226269IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MELGLSLGDA VTVADGGRPE LVLGLGVGVG AGVRRGEEER GRREDVVGAG RWAAMAAASP  60
EPSVRLSLVS SLGFHWPSET GRSEAAARGF DVNRAPSVAA GAPGMEDDEE GPGAAPALSS  120
SPNDSGGSFP LDLSGHGLRG HAEAAAQGGG GGGERSSSRA SDDDEGASAR KKLRLSKEQS  180
AFLEESFKEH STLNPKQKVA LAKQLNLRPR QVEVWFQNRR ARTKLKQTEV DCEYLKRCCE  240
TLTEENRRLH KELAELRALK TARPFYMHLP ATTLSMCPSC ERVASNPATA STSAPAAATS  300
PAAAPTAAAR TAVASPEPHR PSSFAALFAA PLGFPLTAAQ PRPPPPASNC L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1218226RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2411960.0AK241196.1 Oryza sativa Japonica Group cDNA, clone: J065121H01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648883.10.0homeobox-leucine zipper protein HOX27 isoform X2
SwissprotA2YW030.0HOX27_ORYSI; Homeobox-leucine zipper protein HOX27
TrEMBLA0A0E0QK130.0A0A0E0QK13_ORYRU; Uncharacterized protein
STRINGORUFI08G19510.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52093363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.13e-70homeobox from Arabidopsis thaliana