PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI08G17850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ZF-HD | ||||||||
Protein Properties | Length: 348aa MW: 35982.5 Da PI: 8.318 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 105 | 4.7e-33 | 36 | 92 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 +++Y+eClkNhAaslGghavDGCgEfmps+ ++ +++a+lkCaACgCHRnFHRr +e ORUFI08G17850.1 36 AAVYRECLKNHAASLGGHAVDGCGEFMPSPAADaADPASLKCAACGCHRNFHRRLPE 92 679***************************99999******************9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 1.0E-20 | 7 | 89 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 5.7E-28 | 38 | 90 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.418 | 39 | 90 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.0E-30 | 39 | 89 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF101447 | 1.8E-5 | 106 | 114 | No hit | No description |
SuperFamily | SSF46689 | 1.19E-16 | 230 | 301 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.7E-28 | 235 | 302 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.4E-21 | 243 | 299 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MEAVVGVKYR PVVFPNGGAA AAAAGKSKAT PASATAAVYR ECLKNHAASL GGHAVDGCGE 60 FMPSPAADAA DPASLKCAAC GCHRNFHRRL PEAPPSPPLL ALPPPPPPPP PPPPPPQPQQ 120 HLPRTAAVAV APQLLLHGSH QRREQSPETD RVRGPGHHHD DDAAADDDDS EDSEMSDYDD 180 DRSASPLQAP PPVLSPGYLP SATHMLLSLG SASAPAVAAS RPHAAAAAMG PPPPPGAATS 240 ASRKRFRTKF SPEQKQRMQA LSERLGWRLQ KRDEAVVDEC CREIGVGKGV FKVWMHNNKH 300 NFLGGHSARR SAAAAAAAPL APPPVLTARA PVAESGGWGG GGGSPQST |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 2e-20 | 243 | 301 | 17 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004702 | 0.0 | AP004702.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0524F03. | |||
GenBank | AP005159 | 0.0 | AP005159.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0016C11. | |||
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648556.1 | 1e-144 | zinc-finger homeodomain protein 10 isoform X1 | ||||
Refseq | XP_025875847.1 | 1e-144 | zinc-finger homeodomain protein 10 isoform X2 | ||||
Swissprot | Q6Z528 | 1e-144 | ZHD10_ORYSJ; Zinc-finger homeodomain protein 10 | ||||
TrEMBL | A0A0E0QJH1 | 0.0 | A0A0E0QJH1_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI08G17850.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3646 | 33 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28920.1 | 9e-23 | homeobox protein 34 |