PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI08G17690.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 293aa    MW: 31139.9 Da    PI: 5.4181
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI08G17690.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like63.15.3e-202163244
          G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtle 44
                     +rlrWt +LHerFv av++LGG+++AtPk++l++m v+gLtl+
  ORUFI08G17690.1 21 ARLRWTGQLHERFVLAVAELGGADRATPKSVLRAMAVPGLTLS 63
                     7****************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.9E-181963IPR009057Homeodomain-like
SuperFamilySSF466894.48E-71962IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-132162IPR006447Myb domain, plants
PfamPF143793.4E-14135175IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MSSQQQHAGE APASAAAAAR ARLRWTGQLH ERFVLAVAEL GGADRATPKS VLRAMAVPGL  60
TLSTGRRGAA AAMGGGGNGG GGGSGSLNDR SSSSERQPAD HDGDSAADEP RTIAYDGDSD  120
GDAKEGLRDS SRSMVQMQRE VQRKLQEQIE VKRHLQLRME AQGRYLQSVL RRAQQVLADH  180
SLASSPEAAT AELSELASAV DIECMSSSSP PRHHRQSAAT DSCVTTTSSS EAESKAAGSK  240
RLHTSDCTVE QPVQGKRAFN FLQRHNQADQ EEEQEEEYAG AEDGSSSEID LNR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0703380.0AK070338.1 Oryza sativa Japonica Group cDNA clone:J023049D17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650853.11e-165myb-related protein 2
TrEMBLA0A0E0QJF30.0A0A0E0QJF3_ORYRU; Uncharacterized protein
STRINGORUFI08G17690.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112643038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79430.21e-31G2-like family protein