PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI08G17560.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 345aa    MW: 36077.4 Da    PI: 6.2758
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI08G17560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.91e-14123169354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r+h+e+ErrRR+riN  +++Lr+llP+      +K +Ka+ L +++e++k+L
  ORUFI08G17560.1 123 RSHSEAERRRRQRINGHLARLRSLLPNT-----TKTDKASLLAEVIEHVKEL 169
                      78*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.066120169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.93E-14123172No hitNo description
PfamPF000104.0E-12123169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-15124178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-15124178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.4E-14126175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2609.6E-4218269No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MWEAVGGGDG TALLPWPGSA AAAPLYMPPA AAAAAPFAAG EQLPVEQPFY FDGGGGVAGH  60
NHHPHHHQYG MEAPPPMTMM QMGGGGSSSS RMVVSGLLGT LQAELGRMTA KEIMDAKALA  120
ASRSHSEAER RRRQRINGHL ARLRSLLPNT TKTDKASLLA EVIEHVKELK RQTSAMMEDG  180
AAGGEAAAAP VVLLPTEDDE LEVDAAADEG GRLVARASLC CEDRADLIPG IARALAALRL  240
RARRAEIATL GGRVRSVLLI AAVEEEDPDE AGNDDDGEHG YGVAASHRRH ELVASIHEAL  300
RSVMNRKAAS SDTSSSGAGG GGGSIKRQRM ISAHDQQGSF NSSGW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1096160.0AK109616.1 Oryza sativa Japonica Group cDNA clone:002-137-H01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648851.10.0transcription factor bHLH30
TrEMBLA0A0E0QJD70.0A0A0E0QJD7_ORYRU; Uncharacterized protein
STRINGORUFI08G17560.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.16e-39bHLH family protein