PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI08G14270.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 620aa    MW: 67809.4 Da    PI: 8.4848
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI08G14270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR37.45.1e-12167205342
              TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                      k +C+Ck skClk+YCeCf++g++C   C+C++C+N+ ++
  ORUFI08G14270.1 167 KTNCSCKYSKCLKLYCECFENGRYCIG-CNCTNCCNNVNH 205
                      679************************.********9875 PP
2TCR47.34.2e-15248288141
              TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                      k++kgC+Ck+++ClkkYCeCf+a ++Cse+C+C++CkN ++
  ORUFI08G14270.1 248 KHTKGCKCKRTECLKKYCECFKASVFCSENCRCTGCKNYKS 288
                      589***********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.8E-8165205IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163433.529166288IPR005172CRC domain
PfamPF036384.2E-8168202IPR005172CRC domain
SMARTSM011147.4E-16248289IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.4E-11251286IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MEKPLQLCPG SVKIDFASAS YAGKADIAAT AAALSHALGP PCYQLPLAKV NSSLPLWPPV  60
ICPSTFAQKR PMSLPSPPPA KKLQVQRSSS MLPQDFPKLE VLTVEKPTKL QVRRSPQHVS  120
PAPKQGSPKM ERPLLPRPAT FIDVMLSSQK PSSEMWSETK DVTLTGKTNC SCKYSKCLKL  180
YCECFENGRY CIGCNCTNCC NNVNHENARQ DAINVALERN PAAFMPKVSN STAHNCESKA  240
AEGDIVGKHT KGCKCKRTEC LKKYCECFKA SVFCSENCRC TGCKNYKSNE DRISQQNTVH  300
VHHVQNPASS GMVGQSVMIF HAAENDSSLS LAASVSDHSI NNTSHVLSYS PTSSVTREDA  360
KSLVKYVPHE VTYRPSLADI IQIEDVNELC NLLILVSRQA GATLLESGIK ENTKRKKLNR  420
AESCLSSTNH DREAIQKEPA KQMCSLEKSS NEVLIAEGRL ELPRADPFDV QKGNKRPLSP  480
GTQALMCDEQ DAVFLDSKAP DATPSTTEEN LVDIFKEQEK RVLTNFRDYL CKLATCGKLQ  540
ELKLSLASTN CSEQAFADHG NNSSITRVAK DQTNNPSVLQ QGGKHHSSGR LILARTKIGN  600
AGIGKLMGQK SPLHNGVDKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-2617029214127Protein lin-54 homolog
5fd3_B3e-2617029214127Protein lin-54 homolog
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0714930.0AK071493.1 Oryza sativa Japonica Group cDNA clone:J023097M11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650564.10.0protein tesmin/TSO1-like CXC 6 isoform X2
TrEMBLA0A0E0QI710.0A0A0E0QI71_ORYRU; Uncharacterized protein
STRINGORUFI08G14270.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138462025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20110.21e-62Tesmin/TSO1-like CXC domain-containing protein