PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI08G13980.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | CPP | ||||||||
Protein Properties | Length: 289aa MW: 32218.7 Da PI: 8.7389 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 39.1 | 1.5e-12 | 105 | 143 | 3 | 42 |
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 k +C+Ck skClk+YCeCf++g++C C+C++C+N+ ++ ORUFI08G13980.1 105 KTNCSCKYSKCLKLYCECFQKGRYCIG-CNCTNCCNNVNH 143 789************************.********9875 PP | |||||||
2 | TCR | 42.7 | 1.1e-13 | 186 | 226 | 1 | 41 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 k++kgC+Ck+++ lkkYCeCf+a ++Cse+C+C++CkN ++ ORUFI08G13980.1 186 KHTKGCKCKRTEYLKKYCECFKASVFCSENCRCTGCKNFKS 226 589***********************************765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 1.0E-7 | 103 | 143 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 32.037 | 104 | 226 | IPR005172 | CRC domain |
Pfam | PF03638 | 1.3E-8 | 106 | 140 | IPR005172 | CRC domain |
SMART | SM01114 | 6.1E-13 | 186 | 227 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.6E-10 | 189 | 224 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MRLGRPAISS HWQNPPLAKK LQVQQSSSIL PQDFPKLEVL PVEKPTKLQE RRSPQHVSPE 60 LKQGSPKMER PLLPRPATFI DVMLSSQKPS SDMWSETKDV TLTRKTNCSC KYSKCLKLYC 120 ECFQKGRYCI GCNCTNCCNN VNHENARHDA INVALERNPA AFMPKVSNST AHNCESKAAE 180 GDIVGKHTKG CKCKRTEYLK KYCECFKASV FCSENCRCTG CKNFKSNEDR ISQKNTVHAH 240 NVQNPASSGM VGQSVIIFHA AENDSSLSLA ASVSDHSINN NTSHLIQVE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 2e-25 | 108 | 230 | 14 | 127 | Protein lin-54 homolog |
5fd3_B | 2e-25 | 108 | 230 | 14 | 127 | Protein lin-54 homolog |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK071493 | 0.0 | AK071493.1 Oryza sativa Japonica Group cDNA clone:J023097M11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648875.1 | 1e-179 | protein tesmin/TSO1-like CXC 6 | ||||
TrEMBL | A0A0E0QI33 | 0.0 | A0A0E0QI33_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI08G13980.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13846 | 20 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20110.1 | 7e-40 | Tesmin/TSO1-like CXC domain-containing protein |