PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI08G11760.2
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 359aa    MW: 40481.2 Da    PI: 8.3481
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI08G11760.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.61.7e-166821395
                     TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                     ++ +++pk+f+++ +g+   + +++le+++ +s +v++  +k+++++++t+GW +Fvk  +L+ gD+++F+++g+s+f   v 
  ORUFI08G11760.2  6 QHEMIIPKEFVQRLKGD--IPGEIQLETRNRNSHTVRV--DKTQEKVIFTEGWAQFVKTFDLQMGDSMMFRFNGNSQF--DVI 82
                     5679*******999888..5558***************..*********************************99999..554 PP
2B342.41.2e-132723551099
                      HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      +++ + l++ +++++++ ++   +kt++  ++ g +W+++l  + +sg   + +G ++F+++n++ +gD+++F+l ++++ +++v+++r+
  ORUFI08G11760.2 272 SGRISSLSIANRYVDNYLQD---EKTIR-LSRLGDKWNIRL--SDSSGNRRMVGGCRKFAEDNDVGVGDICLFELLKNHKCTMKVHIIRA 355
                      5566789*******888433...34788.56799*******..77777777889*********************9998888****9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.928187IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.5E-18485IPR015300DNA-binding pseudobarrel domain
CDDcd100172.99E-16585No hitNo description
SMARTSM010196.4E-6587IPR003340B3 DNA binding domain
SuperFamilySSF1019362.94E-18591IPR015300DNA-binding pseudobarrel domain
PfamPF023622.3E-14780IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-16256356IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.16E-14257356IPR015300DNA-binding pseudobarrel domain
CDDcd100172.88E-14260354No hitNo description
SMARTSM010190.0014262356IPR003340B3 DNA binding domain
PROSITE profilePS508639.432263356IPR003340B3 DNA binding domain
PfamPF023625.6E-12270355IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MMGDFQHEMI IPKEFVQRLK GDIPGEIQLE TRNRNSHTVR VDKTQEKVIF TEGWAQFVKT  60
FDLQMGDSMM FRFNGNSQFD VIIVDQIGRE KACSAVVDDS QNPNVQERRV DATETLNSSR  120
AHSQPMPMQS TTETVNHSHA RPCPMHTAVD CMPLSHAHPQ PMPMQFPTET VNHCHAPTGP  180
MEMPLENVAL SHAHARPLQM QSQPTDRLTQ VQRGYSLSSK DQDCRVGVIP DPIIGQKTIL  240
SRVQVNVVKR KIQNIGSQIP IFVSVIGKNN ASGRISSLSI ANRYVDNYLQ DEKTIRLSRL  300
GDKWNIRLSD SSGNRRMVGG CRKFAEDNDV GVGDICLFEL LKNHKCTMKV HIIRAKDIC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0683590.0AK068359.1 Oryza sativa Japonica Group cDNA clone:J013146O10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648704.10.0B3 domain-containing protein Os08g0324300
RefseqXP_015648705.10.0B3 domain-containing protein Os08g0324300
RefseqXP_015648706.10.0B3 domain-containing protein Os08g0324300
RefseqXP_015648707.10.0B3 domain-containing protein Os08g0324300
SwissprotQ6Z0D91e-161Y8347_ORYSJ; B3 domain-containing protein Os08g0324300
TrEMBLA0A0E0QHC10.0A0A0E0QHC1_ORYRU; Uncharacterized protein
STRINGORUFI08G11760.40.0(Oryza rufipogon)
STRINGONIVA08G05080.20.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-15B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]