PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ORUFI08G11760.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 350aa MW: 39432.9 Da PI: 8.2408 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.7 | 1.6e-16 | 6 | 82 | 13 | 95 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ++ +++pk+f+++ +g+ + +++le+++ +s +v++ +k+++++++t+GW +Fvk +L+ gD+++F+++g+s+f v ORUFI08G11760.1 6 QHEMIIPKEFVQRLKGD--IPGEIQLETRNRNSHTVRV--DKTQEKVIFTEGWAQFVKTFDLQMGDSMMFRFNGNSQF--DVI 82 5679*******999888..5558***************..*********************************99999..554 PP | |||||||
2 | B3 | 36.9 | 6.3e-12 | 272 | 345 | 10 | 88 |
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 +++ + l++ +++++++ ++ +kt++ ++ g +W+++l + +sg + +G ++F+++n++ +gD+++F+l ++ + ORUFI08G11760.1 272 SGRISSLSIANRYVDNYLQD---EKTIR-LSRLGDKWNIRL--SDSSGNRRMVGGCRKFAEDNDVGVGDICLFELLKNhK 345 5566789*******888433...34788.56799*******..77777777889********************987634 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.928 | 1 | 87 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.4E-18 | 4 | 85 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.66E-16 | 5 | 85 | No hit | No description |
SMART | SM01019 | 6.4E-6 | 5 | 87 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.94E-18 | 5 | 91 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.2E-14 | 7 | 80 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.1E-14 | 256 | 347 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.28E-13 | 257 | 348 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.13E-11 | 260 | 342 | No hit | No description |
SMART | SM01019 | 0.046 | 262 | 348 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 8.755 | 263 | 350 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.8E-10 | 270 | 345 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 350 aa Download sequence Send to blast |
MMGDFQHEMI IPKEFVQRLK GDIPGEIQLE TRNRNSHTVR VDKTQEKVIF TEGWAQFVKT 60 FDLQMGDSMM FRFNGNSQFD VIIVDQIGRE KACSAVVDDS QNPNVQERRV DATETLNSSR 120 AHSQPMPMQS TTETVNHSHA RPCPMHTAVD CMPLSHAHPQ PMPMQFPTET VNHCHAPTGP 180 MEMPLENVAL SHAHARPLQM QSQPTDRLTQ VQRGYSLSSK DQDCRVGVIP DPIIGQKTIL 240 SRVQVNVVKR KIQNIGSQIP IFVSVIGKNN ASGRISSLSI ANRYVDNYLQ DEKTIRLSRL 300 GDKWNIRLSD SSGNRRMVGG CRKFAEDNDV GVGDICLFEL LKNHKCTMKT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK068359 | 0.0 | AK068359.1 Oryza sativa Japonica Group cDNA clone:J013146O10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648704.1 | 0.0 | B3 domain-containing protein Os08g0324300 | ||||
Refseq | XP_015648705.1 | 0.0 | B3 domain-containing protein Os08g0324300 | ||||
Refseq | XP_015648706.1 | 0.0 | B3 domain-containing protein Os08g0324300 | ||||
Refseq | XP_015648707.1 | 0.0 | B3 domain-containing protein Os08g0324300 | ||||
Swissprot | Q6Z0D9 | 1e-161 | Y8347_ORYSJ; B3 domain-containing protein Os08g0324300 | ||||
TrEMBL | A0A0E0QHC0 | 0.0 | A0A0E0QHC0_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI08G11760.4 | 0.0 | (Oryza rufipogon) | ||||
STRING | ONIVA08G05080.2 | 0.0 | (Oryza nivara) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G18990.1 | 4e-14 | B3 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|