PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI08G11110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 138aa MW: 14259.1 Da PI: 11.3466 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.6 | 4.8e-05 | 24 | 46 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ Cg+sFs+ L H +H ORUFI08G11110.1 24 FKCSVCGRSFSSYQALGGHKTSH 46 89**********99998888777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.78E-6 | 23 | 50 | No hit | No description |
Pfam | PF13912 | 1.6E-12 | 24 | 47 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0081 | 24 | 46 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.78 | 24 | 51 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 8.3E-4 | 24 | 46 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 26 | 46 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MLALGGHHRV QAPPPLSAPV GAEFKCSVCG RSFSSYQALG GHKTSHRFKL PTPPASPVLA 60 PASSEVQSPL AFSPPRGGHH RVQAPPPLSA LVRPSAGAWR PQDEPPGQAA DSARSSGNGH 120 SAARAFDLNL PAGAIRDR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Potential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004458 | 1e-121 | AP004458.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0045D08. | |||
GenBank | AP014964 | 1e-121 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY360393 | 1e-121 | AY360393.2 Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0096K16, complete sequence. | |||
GenBank | AY360394 | 1e-121 | AY360394.1 Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0070J19, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649250.1 | 5e-42 | zinc finger protein 1, partial | ||||
Swissprot | Q42430 | 2e-22 | ZFP1_WHEAT; Zinc finger protein 1 | ||||
TrEMBL | A0A0E0QH36 | 2e-91 | A0A0E0QH36_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI08G11110.1 | 3e-92 | (Oryza rufipogon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67450.1 | 1e-10 | zinc-finger protein 1 |